Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01471 ATGAATAATCAAGCAAAGAATGTGGCTGCATCATCTTTGTTTGGTCATTCTGGAATGGGCACACAAGCACACCACCCTAACCCCATTCAGCAATGGAACCATTCAATTTCAACCCCTTTACACTCTCAAACACAACCACAGTCTCAGTCACGTCCTCAGACACAATTCCCTGGTCTCTTTCAGCTTTCAGAGTCCCAATCTCACGTGCTTGCACAAGCTCAATATGCACAGACACAATTGCAGTCTCAGATTGCACGTGCTCATCCACAACCTCAAACTCAGCCTTTTGCCCATTTGCATAGTGTAAATACTAATGCTGCTAATGGCACATCATCCCCGGCCACCGGAAAAGCCAACCGACCAACCCCAAAGCCCCTGTTAAGGTCTCATAATTCATCGAATATGAACCAATCCATGCCGGGTGCTCGGCAGCAAAAGAAGCAATCACCAGGGAAGGGGGCTATGTTTTTGCCTGAGTCTGCTCTGTATACTCAATTACTTGATTTTGAGGCTCAGGTTGATACTGCTTTGGCCAGGAGAAAGTTTGATATACAGGAGGCTAGGCTCCCTCCCCATGTTCAGAAAACTCTTCGGGTTTATGTGTTCAATACCTTCTCAAATCATGCTAAAATGGATTCTGAGAATAAGAAGGCCAATGAATCTTCGTGGTCTCTCAGGATAACTGGAAGGATATTGGAAGATGGTATGGATTCGATGTCTGGAATTTCGCAGAGATCGAGTCCTTCGTACCCAAAGTTCTCTGCTTTTTTCAAGAAAATTACCATACATTTGGATCAAAGCATTTATCCTGATAATCATGTCATTGTATGGGATAGTGCACGTTCACCTGCCCAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAAACAAAGAATTTACTGCATTGATTGCAATGGAAATGAATTATACACCTGACAAGTTTATGGTTTCACAACAACTGTCTAAACTCTTAGGTATTGAGGTTGAGACTCGTCCAAGAATAATAGCTTCTATTTTTAACTATGTGAAATCCAGGAAGCTACAGAGCCCAAATGACCCTTCGTCTTTCATTTGTGATCCTTCTCTACAAAGGGTGTTTGGTGAAGAGAAGATGGATTTCACCACGGTTTTTCAGAAGTTAGCACAGCATTTGTCACAGCCACAGCCAATACATCTGGAGCATAACATCAAGCTTTCTGGATATGCTCCAGCTGTAACTGCATGTTATGATATACAGGTTGATGTGCCTTTTCCACTGGAAAAAGACAAGTCTACATTCTTGTCAAGCCTTGAGAGCCAAAAGGAGATTGAAGCTTATGATGAGGCCATTTGTGCTTCCTTAAAGAAGATCCAAGAGCATCGAAGAAGACGGGCATTTTTTCTTAGTTTTAGTCAGTCTCCGGTGGAGTTTATTGATACTTTGATTACTTCTCAAAGCAAGGATTTGAAACTTGTTGCCGGAGATGCCAGGCATAACATTGAAAAGGAACTTCGTTCTGAATTCTACAATCAACCATGGGTCGAGGATGCTGCCATTCGATACTTGAACCGCAAAACTGCAGGAAGTGATGCTCTTGGACGCAATTAA 1587 0.4272 MNNQAKNVAASSLFGHSGMGTQAHHPNPIQQWNHSISTPLHSQTQPQSQSRPQTQFPGLFQLSESQSHVLAQAQYAQTQLQSQIARAHPQPQTQPFAHLHSVNTNAANGTSSPATGKANRPTPKPLLRSHNSSNMNQSMPGARQQKKQSPGKGAMFLPESALYTQLLDFEAQVDTALARRKFDIQEARLPPHVQKTLRVYVFNTFSNHAKMDSENKKANESSWSLRITGRILEDGMDSMSGISQRSSPSYPKFSAFFKKITIHLDQSIYPDNHVIVWDSARSPAQQDGFEVKRKGNKEFTALIAMEMNYTPDKFMVSQQLSKLLGIEVETRPRIIASIFNYVKSRKLQSPNDPSSFICDPSLQRVFGEEKMDFTTVFQKLAQHLSQPQPIHLEHNIKLSGYAPAVTACYDIQVDVPFPLEKDKSTFLSSLESQKEIEAYDEAICASLKKIQEHRRRRAFFLSFSQSPVEFIDTLITSQSKDLKLVAGDARHNIEKELRSEFYNQPWVEDAAIRYLNRKTAGSDALGRN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01471 528 ProSiteProfiles SWIB/MDM2 domain profile. 309 386 IPR003121 -
Viun9g01471 528 SUPERFAMILY SWIB/MDM2 domain 305 394 IPR036885 -
Viun9g01471 528 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 133 483 - -
Viun9g01471 528 MobiDBLite consensus disorder prediction 103 118 - -
Viun9g01471 528 MobiDBLite consensus disorder prediction 15 34 - -
Viun9g01471 528 CDD SWIB_like 316 384 - -
Viun9g01471 528 SMART swib_2 310 389 IPR019835 -
Viun9g01471 528 Gene3D SWIB/MDM2 domain 305 391 IPR036885 -
Viun9g01471 528 Pfam SWIB/MDM2 domain 313 384 IPR003121 -
Viun9g01471 528 MobiDBLite consensus disorder prediction 125 145 - -
Viun9g01471 528 MobiDBLite consensus disorder prediction 103 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01471 Viun-Chr9 17565355 17568211 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Viun9g01471 SWIB 6.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01471 K11650 - gmx:100784907 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04292 3 50643153 50646768 Viun9g01471 9 17565355 17568211 ECH
Viun9g01471 9 17565355 17568211 Viun9g01471 9 17565355 17568211 ECH
Viun3g04292 3 50643153 50646768 Viun9g01471 9 17565355 17568211 PCT