Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04292 ATGAACAACAATAATCCAGCAAAAAATGCTGCAACGCCGTCGTTTTTCACCAACCCCGCTGCACCCTCAATCCCCATGAACCACCCAGCACCCCACCTTCTCTCACAGACGCAGCCTCAACCGCAAACTGGTGCCTCTCACTTCCATGGCCACTTTCAGCTCTCGCAACCGCAAAGCCACGTCCTGGCGCAGCCACACCCTGTTCCTCACCCACAGGTGCACAACAATTCCAACACCAATGCCAACGTTGCAACACCTGCGCCTCCCAAGCGTGCAAATCACAAACCCCCTTCACGCCCTCCCGGTTCCTCCAACACCAACCAATCCTCTGCCTTCAAGACCATGGAACTTACCGTGGCGCCTCCTCGGAAAAAGAGAAGCTTTCCCGAGAAGCTCATTCCCGACAAGGTGGCCAAGCTTGTGCCCGAGTCTGCTATTTATGCTAAGTTGCTTGAACTTGAGACCCACATAGATTCTGTTTTGGTTAGGAAGAAAATTGATGTGCAGGAGAATTTGAGAAACCCTCGCTGTGTTAGGAGAACGCTTAGGATTTATGTGTATAATACATTTTCGAAACAGGTGAAAGTGGAACCTGGGAAGATTGATGTGGAGGAGCTTTCTTGGGTTCTCAGGATAACCGGAAGGGTGTTGGAAGATGGTAAGGATTCTGTGGCAGATGGAGTTTTGTCTAAAGAAAATCGAAGATTCTCGGCTTTCTTCAAGAAGATAACCGTTTACTTGGATCAGGGTTTCTATCCGGATAACCACGTTGTTGTGTGGGATAGTGCCCGTTCGACTGCGCAGCGCGATGGTTTTGAGGTGAAGAGGAAAGGAGATAAGGAATTCACCGCGGTTGTTAGAATGTCAATGAATTATTCGCCTGACAGGTTTGTGGTATCGGCTCAGCTGGCTAGAGTGTTAGGGGTTGAGTTTGACTCCCGCTCTAGGATCATTGCTGCTCTATGGCACTATGTGAAGGCTAAGAAGCTGCAGAGTCCGAATGACCCTTCGTTCTTCATGTGTGATGCTTCTCTCCAAAGGGTGTTTGGGGAGGAGAAGATGAAATTTTCTGTGGCTTCGCAGAAGATATCACAGCATTTGTCACCTCCGCAGCCCATACACCTGGAGCATAAAATCAAGCTTTCGGGAAATTGTCCAGCCGGAGCTACGTGTTACGATGTGCAGGTTGATGTGCCTCTTCCACTAGAGAAGGATATGTCTTCATTCTTGGCAAGCACTGAGAAGCACAAAGAGATTGATGCTTTTGATAAACTGATCTCAGATTCCATAAAGAAGATCCATGAACATCATAGGAGACGAGCATTCTTTCTCGGCTTTAGTCAGTCCCCAGCGGAGTTTATTAATGCTTTGATAGCTTCTCAAAGCAAGGATCTGAAGCTTGTTGCTGGAGATGTGAGCCAGGGTGTTGAGAATGAACGACGTTCTGACTTCTACAATCAACCATGGGTTGAGGATGCTGTTGTTCGCTACCTGACGCGGAAAAATGCTCGAAGTGATGCTCCTGGAAACATCTGA 1536 0.4824 MNNNNPAKNAATPSFFTNPAAPSIPMNHPAPHLLSQTQPQPQTGASHFHGHFQLSQPQSHVLAQPHPVPHPQVHNNSNTNANVATPAPPKRANHKPPSRPPGSSNTNQSSAFKTMELTVAPPRKKRSFPEKLIPDKVAKLVPESAIYAKLLELETHIDSVLVRKKIDVQENLRNPRCVRRTLRIYVYNTFSKQVKVEPGKIDVEELSWVLRITGRVLEDGKDSVADGVLSKENRRFSAFFKKITVYLDQGFYPDNHVVVWDSARSTAQRDGFEVKRKGDKEFTAVVRMSMNYSPDRFVVSAQLARVLGVEFDSRSRIIAALWHYVKAKKLQSPNDPSFFMCDASLQRVFGEEKMKFSVASQKISQHLSPPQPIHLEHKIKLSGNCPAGATCYDVQVDVPLPLEKDMSSFLASTEKHKEIDAFDKLISDSIKKIHEHHRRRAFFLGFSQSPAEFINALIASQSKDLKLVAGDVSQGVENERRSDFYNQPWVEDAVVRYLTRKNARSDAPGNI 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04292 511 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g04292 511 SUPERFAMILY SWIB/MDM2 domain 288 377 IPR036885 -
Viun3g04292 511 Gene3D SWIB/MDM2 domain 289 374 IPR036885 -
Viun3g04292 511 MobiDBLite consensus disorder prediction 98 115 - -
Viun3g04292 511 MobiDBLite consensus disorder prediction 1 123 - -
Viun3g04292 511 MobiDBLite consensus disorder prediction 70 86 - -
Viun3g04292 511 Pfam SWIB/MDM2 domain 296 367 IPR003121 -
Viun3g04292 511 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 111 466 - -
Viun3g04292 511 MobiDBLite consensus disorder prediction 30 62 - -
Viun3g04292 511 ProSiteProfiles SWIB/MDM2 domain profile. 292 369 IPR003121 -
Viun3g04292 511 CDD SWIB_like 299 367 - -
Viun3g04292 511 SMART swib_2 293 372 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04292 Viun-Chr3 50643153 50646768 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Viun3g04292 SWIB 5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04292 K11650 - gmx:100817271 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04292 3 50643153 50646768 Viun9g01471 9 17565355 17568211 ECH
Viun3g04292 3 50643153 50646768 Viun3g04292 3 50643153 50646768 ECH
Viun3g04292 3 50643153 50646768 Viun9g01471 9 17565355 17568211 PCT