Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun9g01345 | ATGGATCCCAACCCTCGAACCTTTCCCATCCTCTCCTACGTCATGTCTCGCCTCCCTTCTCTCACTCCCAGACCAGCCGCCGCCGCCGCGAACTCCGACTCCGACCAGTTCGACGTCGAGCAGCCGCGGGCCCCGGAGATCGTGGGCCAAATGCCGCACCTCGCCGACCCGGACCTCATGGCTTCCATGGGCCGGGCCGTATCCCAGGTGGTCCAGGCCCGAACGGTCCTGAACCTGATCGGGGAGCGGCCCACGCACGAGGAAGTCGACAGCGCCAGGGCCAGGCTGGCGGAGATCGAGGCCCAGCTGTCCCACGAGCTGGAGGAGATCGTGCTCCAGGCCCGGCCCGCGGAGATGGAGATTCACGGGTGGCGGGCCCACCAGGCCGAGAAGGAGAGGGAGTGCCGGGAGCGGGCGGAGACGGAGAAGCGAATCTGGAAGTCGGTGCTGCAGCTGGACGAGATGCACGAGGCGTACGAGAAGGTTCTGAAGGACGCGGAGAAGCGGTTGGTGAAAATGTACGAGTCGAAGGAAGATGGTGATGGCGATGTTGTTGGCGACGAAGTGAACGAAGAGGTTGTGGGAATTCTGCAAGAGGCCTATGGCAAGGGAATGGAACGCCTCAATCTTTCTGCTCGCCAATTGAAGCTCTTGCCTGAAGCATTTGGTCGAATTCCTGGCTTGCTCGTCTTTGATCTTTCTGCCAATCAACTCTCGGCTATTCCTGATTCAATAGCTGGACTGCAAAACCTTGAGGAGCTTAATCTGTCTTCAAATCTTTTGGAGTCTCTGCCAGATTCAATTGGGTTATTACAAAAGTTGAAGTTGCTCAATGTCTCTGGAAACAAGCTGACTGCGCTTCCTGATACCATCTGTCACTGCAGGTCATTGGTTGAGTTGGATGTAAGCTTTAACAGTCTATCATATTTGCCAACAAACATTGGATATGAATTACCGAACTTGCAGAAACTCATGATTCAGTTGAACAAGATTCGATCTCTTCCCTCATCTATCTGTGAGTTGAAGTCCTTGCGCTATTTAGATGCTCATTTTAATGAGCTACATGGGCTTCCCATTGCAATTGGGAGAATGACCAATCTTGAGGTTCTCAACCTGAGCAGTAACTTCAGTGACCTGAAAGAACTACCAGAGACATTTGGTGATTTGACTAACCTCAGGGAATTGGATCTCAGCAATAATCAGATTCATGCGCTTCCTGATACATTTGGGCGCCTTGATAATTTGACCAAGCTAAACCTGGAGCAGAATCCTCTTGAATTGCCACCAATGGAGATTGTAAATCAAGGGGTTGAAGCCGTAAAGGGGTTTATGGCCAAGAGGTGGCTTGATATATTGTTGGAGGAGGAGAGGAGAAACAGCCAAGAAATGCAAGAACAAGAACAGGGTGGTTGGTTAACACGAAGCACCTCCTGGTTGAAGAATGTTTCTGGAAATGTAATTGGGTATATTGGAACTGCCGTTGGAACTCCTATGACGCCCAAATCTCCCAGAGATGCATATCTTGATCAGCAGTTATGA | 1539 | 0.5153 | MDPNPRTFPILSYVMSRLPSLTPRPAAAAANSDSDQFDVEQPRAPEIVGQMPHLADPDLMASMGRAVSQVVQARTVLNLIGERPTHEEVDSARARLAEIEAQLSHELEEIVLQARPAEMEIHGWRAHQAEKERECRERAETEKRIWKSVLQLDEMHEAYEKVLKDAEKRLVKMYESKEDGDGDVVGDEVNEEVVGILQEAYGKGMERLNLSARQLKLLPEAFGRIPGLLVFDLSANQLSAIPDSIAGLQNLEELNLSSNLLESLPDSIGLLQKLKLLNVSGNKLTALPDTICHCRSLVELDVSFNSLSYLPTNIGYELPNLQKLMIQLNKIRSLPSSICELKSLRYLDAHFNELHGLPIAIGRMTNLEVLNLSSNFSDLKELPETFGDLTNLRELDLSNNQIHALPDTFGRLDNLTKLNLEQNPLELPPMEIVNQGVEAVKGFMAKRWLDILLEEERRNSQEMQEQEQGGWLTRSTSWLKNVSGNVIGYIGTAVGTPMTPKSPRDAYLDQQL | 512 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun9g01345 | 512 | SUPERFAMILY | L domain-like | 205 | 425 | - | - | |
| Viun9g01345 | 512 | Coils | Coil | 89 | 109 | - | - | |
| Viun9g01345 | 512 | PANTHER | - | 317 | 468 | - | - | |
| Viun9g01345 | 512 | Gene3D | Ribonuclease Inhibitor | 97 | 319 | IPR032675 | - | |
| Viun9g01345 | 512 | FunFam | Plant intracellular Ras-group-related LRR protein 2 | 313 | 486 | - | - | |
| Viun9g01345 | 512 | FunFam | Plant intracellular Ras-group-related LRR protein 9 | 131 | 309 | - | - | |
| Viun9g01345 | 512 | Gene3D | Ribonuclease Inhibitor | 320 | 438 | IPR032675 | - | |
| Viun9g01345 | 512 | ProSiteProfiles | Leucine-rich repeat profile. | 250 | 271 | IPR001611 | GO:0005515 | |
| Viun9g01345 | 512 | SMART | LRR_bac_2 | 366 | 385 | - | - | |
| Viun9g01345 | 512 | SMART | LRR_bac_2 | 248 | 267 | - | - | |
| Viun9g01345 | 512 | SMART | LRR_bac_2 | 341 | 360 | - | - | |
| Viun9g01345 | 512 | SMART | LRR_bac_2 | 294 | 313 | - | - | |
| Viun9g01345 | 512 | SMART | LRR_bac_2 | 318 | 337 | - | - | |
| Viun9g01345 | 512 | SMART | LRR_bac_2 | 389 | 408 | - | - | |
| Viun9g01345 | 512 | SMART | LRR_bac_2 | 271 | 290 | - | - | |
| Viun9g01345 | 512 | ProSiteProfiles | Leucine-rich repeat profile. | 391 | 412 | IPR001611 | GO:0005515 | |
| Viun9g01345 | 512 | PRINTS | Leucine-rich repeat signature | 251 | 264 | - | - | |
| Viun9g01345 | 512 | PRINTS | Leucine-rich repeat signature | 389 | 402 | - | - | |
| Viun9g01345 | 512 | SMART | LRR_typ_2 | 364 | 388 | IPR003591 | - | |
| Viun9g01345 | 512 | SMART | LRR_typ_2 | 389 | 412 | IPR003591 | - | |
| Viun9g01345 | 512 | SMART | LRR_typ_2 | 318 | 341 | IPR003591 | - | |
| Viun9g01345 | 512 | SMART | LRR_typ_2 | 225 | 247 | IPR003591 | - | |
| Viun9g01345 | 512 | SMART | LRR_typ_2 | 271 | 294 | IPR003591 | - | |
| Viun9g01345 | 512 | SMART | LRR_typ_2 | 248 | 270 | IPR003591 | - | |
| Viun9g01345 | 512 | SMART | LRR_typ_2 | 295 | 317 | IPR003591 | - | |
| Viun9g01345 | 512 | Pfam | Leucine rich repeat | 250 | 307 | IPR001611 | GO:0005515 | |
| Viun9g01345 | 512 | Pfam | Leucine rich repeat | 366 | 425 | IPR001611 | GO:0005515 | |
| Viun9g01345 | 512 | Coils | Coil | 149 | 176 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun9g01345 | Viun-Chr9 | 13458901 | 13462018 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun9g01345 | 271 | 429 | Receptor kinase-like Gene Family | AT4G08850 | 34.940 | 5.43e-09 | 57.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun9g01345 | - | - | gmx:100803823 | 855.514 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Viun9g01345 | 9 | 13458901 | 13462018 | Viun9g01345 | 9 | 13458901 | 13462018 | ECH | |
| Viun3g04372 | 3 | 51455200 | 51457684 | Viun9g01345 | 9 | 13458901 | 13462018 | PCT |