Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04372 ATGCAGGCCACCACCATGGATCCCCACCCAGGAAGCTTCCCCGTTCTCTCCTACGTCATGTCCCGTCTCCCTTCCTTCGGCCCCAGAACCCCAGCCTCCGCTTCTGCCTCCGCCGCCTCTGCCTCCGCCTCCGCCTCCGCCTCCACCCCCGCCTCCGCCTCCGCCTCCACTTCCCATTCCCATCAAGTCGACATCGAACAGCCACCTCCCCCCGATGCTTCCTCTTCCTCCATCGTGGGCCAAATGCCCAATCTAGCCAACCCGGAAATGCTGGCCTCCATGACCCGCGCCATCTCCGACGTTGCCCAGGCCCGATCCGTCTTCAAGGTCATGGGGCCCCGGCCCACCCACGAGGAGGTCGACGAGGCCAAGGCTAAGCTAGCGGACCTGGAAGCCCACCTGTCCCGCCAACTGGAAGAGATCGTGGGCCTGCCCAGGCCCCCGGAGATCGACGAGGCCCGCTGGACTGCCCACATCTCGGAGAAGGAGAAGGTCATCAAGGAATCCACGGAGAAAGAGAAGCGCATTTTGAAGTCCATCATTCAGCTCGACAACATGCACGACGCCTACGGGAAGCTCCTGAAGGACGCCGAGAAGCGCTTGGTCAAGATTTACGAGAACGACGGCGCCGACTACGACAACGTCAACAACGAAAACGACGAGGACGACGAGGACAGTGTCCAAGTGAAAGAACAGGTTGAGGGGATTTTGAAAGAGGCCTACGGAAAAGGGGTGGAGCGAATCGCTCTCTCCGGTAAGCGCCTCAGGTACCTGCCTGAAGCATTTGGCCACATTCCTGCATTGGTCGTCCTCGACGTCTCCACCAATCAACTTTCGGCGATTCCTGATTCCATATGTGGATTGGAAAGTCTCGAGGAGCTTAATCTCTCTTCCAATGCTTTGGAGTCTCTGCCAGAGTCAATTGGCTTGTTGCAGAAGTTGAAGATCCTCAATGTCTCCGGAAACAAGCTGACTGCTCTTCCTGATTCCATTAGTAAGTGCAGTTCATTGGTGGAGCTAGATGCAAGCTTTAACAGCCTGTCGTATTTGCCAACAAACATTGGATTTGAGATGCATAATTTACAGAAGCTTATGATTCAGTTGAACAAGATTCGATCTCTTCCCTCATCAGTTTGTGAGATGAAATCCCTGCGCTATCTGGATGCTCACTTTAACGAGCTGCGCGGGCTTCCTGTTGCGATTGGGAAATTGAGTAATCTTCAAGTTATAAACCTGAGCAGTAACTTCAGTGACCTCAAAGAACTTCCAGAGACCTTTGGTGATTTGATCAACCTCAGGGAGTTGGATCTGAGCAACAACCAAATTCATGCACTTCCTGATTCTTTTGGTCGCCTTCATAACTTGACCAAGCTAAACTTGGAACAGAATCCTGTTGAAGTGCCACCTATGTATGTGGTGGAGGAAGGGCTCCAAGCCATAAAGTGCTTCATGTCTCAGAGATGGATTGAGATATTGGAGGAGGAAGAAAAGAAAACCACCCAGGAAGTGCAAGAACACGGAGAAAATGGGTGGTTAACGCGAAGCACCTCTTGGCTGAAGAATGTTTCTGAAAATGTATCTGAGATGATTATGTCCCCCAAAACTCCCAGAGAAGCGTATCTTAATCAGCAGCTATGA 1638 0.525 MQATTMDPHPGSFPVLSYVMSRLPSFGPRTPASASASAASASASASASTPASASASTSHSHQVDIEQPPPPDASSSSIVGQMPNLANPEMLASMTRAISDVAQARSVFKVMGPRPTHEEVDEAKAKLADLEAHLSRQLEEIVGLPRPPEIDEARWTAHISEKEKVIKESTEKEKRILKSIIQLDNMHDAYGKLLKDAEKRLVKIYENDGADYDNVNNENDEDDEDSVQVKEQVEGILKEAYGKGVERIALSGKRLRYLPEAFGHIPALVVLDVSTNQLSAIPDSICGLESLEELNLSSNALESLPESIGLLQKLKILNVSGNKLTALPDSISKCSSLVELDASFNSLSYLPTNIGFEMHNLQKLMIQLNKIRSLPSSVCEMKSLRYLDAHFNELRGLPVAIGKLSNLQVINLSSNFSDLKELPETFGDLINLRELDLSNNQIHALPDSFGRLHNLTKLNLEQNPVEVPPMYVVEEGLQAIKCFMSQRWIEILEEEEKKTTQEVQEHGENGWLTRSTSWLKNVSENVSEMIMSPKTPREAYLNQQL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04372 545 Gene3D Ribonuclease Inhibitor 182 360 IPR032675 -
Viun3g04372 545 ProSiteProfiles Leucine-rich repeat profile. 431 452 IPR001611 GO:0005515
Viun3g04372 545 PANTHER - 359 463 - -
Viun3g04372 545 FunFam Plant intracellular Ras-group-related LRR protein 2 353 526 - -
Viun3g04372 545 Coils Coil 120 140 - -
Viun3g04372 545 FunFam Plant intracellular Ras-group-related LRR protein 9 162 349 - -
Viun3g04372 545 MobiDBLite consensus disorder prediction 24 81 - -
Viun3g04372 545 PRINTS Leucine-rich repeat signature 268 281 - -
Viun3g04372 545 PRINTS Leucine-rich repeat signature 288 301 - -
Viun3g04372 545 Coils Coil 489 509 - -
Viun3g04372 545 SUPERFAMILY L domain-like 239 470 - -
Viun3g04372 545 Gene3D Ribonuclease Inhibitor 361 481 IPR032675 -
Viun3g04372 545 SMART LRR_bac_2 381 400 - -
Viun3g04372 545 SMART LRR_bac_2 265 284 - -
Viun3g04372 545 SMART LRR_bac_2 288 307 - -
Viun3g04372 545 SMART LRR_bac_2 334 353 - -
Viun3g04372 545 SMART LRR_bac_2 404 425 - -
Viun3g04372 545 SMART LRR_bac_2 429 448 - -
Viun3g04372 545 SMART LRR_bac_2 311 330 - -
Viun3g04372 545 SMART LRR_bac_2 358 377 - -
Viun3g04372 545 ProSiteProfiles Leucine-rich repeat profile. 290 311 IPR001611 GO:0005515
Viun3g04372 545 ProSiteProfiles Leucine-rich repeat profile. 313 334 IPR001611 GO:0005515
Viun3g04372 545 SMART LRR_typ_2 404 428 IPR003591 -
Viun3g04372 545 SMART LRR_typ_2 358 381 IPR003591 -
Viun3g04372 545 SMART LRR_typ_2 265 287 IPR003591 -
Viun3g04372 545 SMART LRR_typ_2 311 334 IPR003591 -
Viun3g04372 545 SMART LRR_typ_2 288 310 IPR003591 -
Viun3g04372 545 SMART LRR_typ_2 335 357 IPR003591 -
Viun3g04372 545 SMART LRR_typ_2 429 452 IPR003591 -
Viun3g04372 545 MobiDBLite consensus disorder prediction 28 81 - -
Viun3g04372 545 Pfam Leucine rich repeat 360 415 IPR001611 GO:0005515
Viun3g04372 545 Pfam Leucine rich repeat 291 347 IPR001611 GO:0005515
Viun3g04372 545 Pfam Leucine rich repeat 423 464 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04372 Viun-Chr3 51455200 51457684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04372 264 470 Receptor kinase-like Gene Family AT5G56040 27.778 1.83e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04372 - - vun:114179436 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04372 3 51455200 51457684 Viun3g04372 3 51455200 51457684 ECH
Viun3g04372 3 51455200 51457684 Viun9g01345 9 13458901 13462018 PCT