Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01268 ATGAAGGGAACTCTAAGATACTTAGCAGGAATGGCAGGCCCTAGTGGTTTTGGCTCAAACTCAACCGCTGAACAAGTCACTGAAGATTCTTCTTGCTTCCTTCCCTCATCTCTAACAGCTCTCATCACTGGGGCAAGTTCTGGTATTGGAGCTGAAACAGCTAGAGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGATTGGTGCAAGGGACTTGAAGAAGGCCATGGAAGTGAAAAAGAACATTCAGAAGGAGAGTCCAAAGGCTGAGGTGGTTCTGTTGGAGATTGATCTTAGCTCTTTTGGTTCTGTACAGAGATTTTGTTCCGAGTTCTTAGCTTTAGAACTTCCCCTTAATATTCTCATAAACAATGCCGGGATATTTTCTCAAAACTTGGAGTTCTCTGAGGATAAAATTGAGACCACATTTGCTACAAATTACTTAGGTCATTTTTTGTTAACAGAAATTTTATTAGAGAAAATGATAGAGACAGCAGAGAAGACAGGTATTGAAGGAAGAATAATAAACGTTTCTTCTGTCATACATAGCTGGGTGAAGAAAGATGGTTTTGGTTTCAACGACATACTGAGTGGAAAAAAATATAATGGCACACGCGCTTATGCTGAGTCAAAATTGGCAAATATTTTGCATGCCAAAGAAATAGCCAAGCAACTCAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGTACATCCAGGCATTGTGAAGACAGGAATTATTAGAGCTCACAAGGGCTTATTAACGGATTCCCTGTTTTTTATCGCATCAAAGTTACTCAAAACAACATCACAGGGTGCAGCAACTACGTGTTATGTTGCTCTGAGCTCAAAAACAGAAGGGATAAGTGGAAAATACTTTGCAGATTGTAACGAGAGTAAATGCTCGAGCCTAGCAAATGACGAGATGGAAGCACAAAAGCTATGGAACAACACCCATGCCTTGCTTCACAAACGACTACGTCAAGCAACAATTTAA 993 0.4038 MKGTLRYLAGMAGPSGFGSNSTAEQVTEDSSCFLPSSLTALITGASSGIGAETARVLAKRGVRVVIGARDLKKAMEVKKNIQKESPKAEVVLLEIDLSSFGSVQRFCSEFLALELPLNILINNAGIFSQNLEFSEDKIETTFATNYLGHFLLTEILLEKMIETAEKTGIEGRIINVSSVIHSWVKKDGFGFNDILSGKKYNGTRAYAESKLANILHAKEIAKQLKARNARVTINAVHPGIVKTGIIRAHKGLLTDSLFFIASKLLKTTSQGAATTCYVALSSKTEGISGKYFADCNESKCSSLANDEMEAQKLWNNTHALLHKRLRQATI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01268 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Viun9g01268 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Viun9g01268 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Viun9g01268 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Viun9g01268 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Viun9g01268 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Viun9g01268 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Viun9g01268 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Viun9g01268 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Viun9g01268 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 298 IPR036291 -
Viun9g01268 330 PANTHER RETINOL DEHYDROGENASE 14 320 - -
Viun9g01268 330 Gene3D - 31 326 - -
Viun9g01268 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01268 Viun-Chr9 12398449 12401682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01268 41 294 Acyl Lipid Metabolism Gene Families AT3G55290 28.947 1.38e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01268 - - gmx:100801384 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01268 9 12398449 12401682 Viun9g01268 9 12398449 12401682 ECH
Viun3g04389 3 51712872 51715554 Viun9g01268 9 12398449 12401682 PCT