Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04389 ATGAAGGCAACACTACGATACTTAGCAGGCATTGCTGGCCCAAGTGGTTTCGGCTCAAATTCAACAGCTGAACAAGTCACTCAAGATTTCTCTTCCTTGCTCCCTTCAAATCTAACCGCTCTCATCACTGGTGCGACTTCTGGAATTGGAGCCGAAACAGCAAGAGTGCTAGCAAAAAGAGGAGTGAGAGTTGTGATCGGTGCGAGGGACTTGAAAAAGGCGAGGGAAGTGAGAGAGAAAATCCAAAAGGAGAGTCCTCATGCTCAGGTTATTCTGCTGGAGATCGATCTCAGCTCTTTTGCCTCTGTACAGAGATTTTGCTCAGAGTTTTTAGCTTTAGAATTGCCCCTTAATATTCTCATAAACAATGCAGGAATGTACTCTCAGAACTTGGAGTTCTCCGAAGAGAAAATCGAAATGACGTTTGCTACAAATTACTTAGGACATTTTTTGTTAACGAAAATGCTGCTAGAGAAAATGATAGATACTGCAAAGAAATCGGGTATTGAAGGAAGAATAATAAACGTTTCCTCTGTGATTCATAGCTGGGTGAAAAGATCCACGTTTTGTTTCAACGACATGCTCTGCGGAAAAAATTATAATGGCACACGCGCATATGCTCAGTCAAAATTGGCAACAATTCTGCATGTGAAGGCAGTGGCAAGACAACTGAAGGAAAGGAATGCAAATGTAACAATTAACGCAGTGCATCCAGGGATTGTAAAGACGGGGATTATCAGGGCGCATAAGGGCTTAATAACGGATTCCCTGTTTTTCATTGCATCCAAGTTACTGAAATCGATATCACAGGGAGCATCAACGACGTGTTATGTTGCGCTAAGTGGAAAAACAGAAGGAGTGAGTGGAAAATATTTTACAGATTGTAACGAGAGTAACTCTTCAAGTCTTGCAAACGAGGAATCAGAAGCAAAAAAGCTATGGAATGAAACCTATGCATTGCTTCACAAACGGTTACGTCAAGCCCCAAATTGA 993 0.4189 MKATLRYLAGIAGPSGFGSNSTAEQVTQDFSSLLPSNLTALITGATSGIGAETARVLAKRGVRVVIGARDLKKAREVREKIQKESPHAQVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTAKKSGIEGRIINVSSVIHSWVKRSTFCFNDMLCGKNYNGTRAYAQSKLATILHVKAVARQLKERNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSGKTEGVSGKYFTDCNESNSSSLANEESEAKKLWNETYALLHKRLRQAPN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04389 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Viun3g04389 330 Gene3D - 34 326 - -
Viun3g04389 330 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Viun3g04389 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Viun3g04389 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 298 IPR036291 -
Viun3g04389 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Viun3g04389 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Viun3g04389 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Viun3g04389 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Viun3g04389 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Viun3g04389 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Viun3g04389 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Viun3g04389 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04389 Viun-Chr3 51712872 51715554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04389 19 245 Acyl Lipid Metabolism Gene Families AT1G63380 28.511 1.24e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04389 - - gmx:100776567 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04389 3 51712872 51715554 Viun3g04389 3 51712872 51715554 ECH
Viun3g04389 3 51712872 51715554 Viun9g01268 9 12398449 12401682 PCT