Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01253 ATGATGAAGTTCATGATCAAACGTTCAGCCATGGGTTCCATTTGCATGTGCCATTTTATTCTACCACTCACCATTGCTGTTGTTGCAACTCTAGGAGACAACACAGCAGAATCCTACTGGCTTCTGAAAATCAAATCAGAACTGGTTGATCCATTAGGAGCTCTGAGAAACTGGTCTCCAACAACTCATTTTTGTAGCTGGAATGGAATAACATGTGAAGTTGATCAGGCACATGTGGTAGGCCTTAATTTGTCTGGCTCAGGAATATCAGGTTCCATTCCAGGTGAGTTCAGTCACCTAATTTATCTTCAAGCACTTGATTTGTCTTCAAATAACCTCACAGGCTCAATCCCTTCTGAACTTGGACAGCTTCAAAGTCTAAGAACACTGCTTCTGTACTCAAATTATCTCTCCAGCAATATTCCTGGAGAGATAGGTAGTTTGAGTAAGTTGCAGATTCTTAGACTAGGAGATAACAGTTTGGCAGGTGAAATTCCACCTAGCATTGGCAACTTGAATGATTTGACAGTGCTAGGTGTAGCCAACTGCAACTTAAGTGGCAGCATACCTGTTGAGGTTGGCAACTTGAAGAATCTTGTGTCTCTTGATCTACAAATGAACAATCTAAGTGGATTCATACCTAAAGAGATTCAAGGCTGTCAAGAGCTGCAGAATTTTGCAGCATCAAACAACATGCTTGAAGGAGAAATACCCTCCTCAATGGGGTCTCTGATATCATTGAGAATTTTGAACCTGGCTAATAACACTCTATCTGGATCAATTCCTACCTCTTTGAGTCTTCTCTCCAATCTGACATACCTTAATTTGCTTGGAAACAAACTAAATGGTGAAATTCCTTCAGAGCTTAACAGTTTGAGCCAGCTACAGAAGCTTGACTTATCCAGAAACAACCTTTCTGGATCACTGACCCTCCTCAGTGTCAACTTACAGAATCTTGAAACTATGGTTCTGTCTGATAATGCTTTAACAGGTATTCCATATAACTTCTGCCTCAGAGGTTCTAAACTTCAGCAACTGTTCTTGGCTAGGAATAAGCTTTCTGGAAGATTTCCCCTGGGGATACTCAACTGTTCCTCAATCCAACAGGTTGACCTTTCTGACAACAGTTTTGAAGGTGAACTTCCATCCAACCTGGACAAACTGCAGAATCTCACAGATCTCATGCTCAACAACAACAGCTTCATTGGATCTTTACCTTCATCAATTGGAAATATCAGTAGCTTGAGAAGTCTTTTCTTGTTTGGAAACTCTTTCACAGGAAAAATCCCAGTTGAGATTGGAAGGCTAAAGAGGTTGAACACCATTTACCTCTATGATAACCAGATGTCTGGACCTATTCCAAGAGAGTTAACAAACTGCACAAGCTTAACTGGAATTGACTTCTTTGGAAACCATTTTTATGGCCCCATTCCAGAGACTATAGGTAAGCTAAAGGACTTAACTGTTCTCCATTTAAGGCAAAATGATCTTTCAGGTCCAATCCCACCAAGCATGGGGTACTGCAAAAGGCTTCAGTTATTGGCTTTAGCAGATAACAAGTTGTCAGGTTCCATACCCCCCACATTCAGTTACCTTTCACAACTTAGAACCATTACCCTTTACAACAACTCCTTTCAAGGACCACTACCTGATTCCCTCTCTCTTCTTAGAAACCTTAAAATCATAAACTTTTCCAATAACAAGTTCAGTGGTAATATCTTCCCTTTGACCGGTTCAAATTCTCTCACTGTTTTGGACCTGACAAACAACAGCTTCTCAGGTTCCATCCCTTCTATTCTAGCCAACTCTGGAGATCTCACCCGTCTCAGACTTGCAAACAATTATCTCACAGGAACCATTCCTTCTGAACTTGGCCTCCTCACTAAGCTGAACTTCCTTGATTTATCATTCAACAACTTATCAGGGCATGTGCCACCTCAACTCTCCAACTGCAAGAAAATTGAACACCTTCTCCTGAACAATAACAGATTGAGTGGCCAAATGTTGCCATGGCTAGGAAGCTTGCAAGAACTTGGTGAGTTGGATCTCTCATTCAACAACTTCCATGGAAGAGTTCCTGCTGAGCTTGGAGGATGCTCAAAGTTGCTCAAGCTTTCTCTCCATCACAACAATCTCTCTGGAGAAATCCCTCTTGAGATTGGAAACCTCACTTCACTCAATGTCTTCAACTTGCAAAGGAATAGTCTTTCTGGCCACATTCCATCAACAATTCAGCAATGCTCTAAGCTGTATGAGCTAAGGCTCTCAGAGAACTTCCTCTCAGGTATTATACCAGTTGGACTAGGAGCAGTGACTGAGTTGCAAGTCATATTGGACCTCAGTAGAAACCTCTTTTCTGGTGAGATTCCTTCATCTCTGGGAAATCTCATGAAGCTAGAAAGACTTGATCTTTCTTTTAACCATCTTCAAGGACAAGTTCCTCCTTCACTTGGTCAACTTACCAGCCTTCATGTGCTAAATCTCTCAAATAACCATCTTCATGGCCTCATTCCATCAACCTTTTCCGGGTTCCCACCAAGCTCTTTCCTGAATAACGACCACTTGTGTGGCCCTCCACTAGCATTGTGCTCGGAAGCTACGCGAATGAAGCTCTCAAACTCACAAGTAGCAGCAATCATAGTTGCCATTGTCCTTACTTCAACTGTGATATGCTTAGTATTATTGTATATAATGTTGAGAATCTGGTGTAACTGGAAAAAGGTAGCCGTTTCAAGTGAAGATAGTGGCATGGTGGAACAGAAGACAAGAAATGGAGAGTACTGGAACATGAATTCCCCCGAGCTGTTTTCTTCACCAGATATACAAATTTCAGCTGCACCTTGCATTTGTAATCTCAAAATTGATGCATCAGCCAGGGACAATACCTTGGTTAGATAA 2898 0.4158 MMKFMIKRSAMGSICMCHFILPLTIAVVATLGDNTAESYWLLKIKSELVDPLGALRNWSPTTHFCSWNGITCEVDQAHVVGLNLSGSGISGSIPGEFSHLIYLQALDLSSNNLTGSIPSELGQLQSLRTLLLYSNYLSSNIPGEIGSLSKLQILRLGDNSLAGEIPPSIGNLNDLTVLGVANCNLSGSIPVEVGNLKNLVSLDLQMNNLSGFIPKEIQGCQELQNFAASNNMLEGEIPSSMGSLISLRILNLANNTLSGSIPTSLSLLSNLTYLNLLGNKLNGEIPSELNSLSQLQKLDLSRNNLSGSLTLLSVNLQNLETMVLSDNALTGIPYNFCLRGSKLQQLFLARNKLSGRFPLGILNCSSIQQVDLSDNSFEGELPSNLDKLQNLTDLMLNNNSFIGSLPSSIGNISSLRSLFLFGNSFTGKIPVEIGRLKRLNTIYLYDNQMSGPIPRELTNCTSLTGIDFFGNHFYGPIPETIGKLKDLTVLHLRQNDLSGPIPPSMGYCKRLQLLALADNKLSGSIPPTFSYLSQLRTITLYNNSFQGPLPDSLSLLRNLKIINFSNNKFSGNIFPLTGSNSLTVLDLTNNSFSGSIPSILANSGDLTRLRLANNYLTGTIPSELGLLTKLNFLDLSFNNLSGHVPPQLSNCKKIEHLLLNNNRLSGQMLPWLGSLQELGELDLSFNNFHGRVPAELGGCSKLLKLSLHHNNLSGEIPLEIGNLTSLNVFNLQRNSLSGHIPSTIQQCSKLYELRLSENFLSGIIPVGLGAVTELQVILDLSRNLFSGEIPSSLGNLMKLERLDLSFNHLQGQVPPSLGQLTSLHVLNLSNNHLHGLIPSTFSGFPPSSFLNNDHLCGPPLALCSEATRMKLSNSQVAAIIVAIVLTSTVICLVLLYIMLRIWCNWKKVAVSSEDSGMVEQKTRNGEYWNMNSPELFSSPDIQISAAPCICNLKIDASARDNTLVR 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01253 965 Gene3D Ribonuclease Inhibitor 508 867 IPR032675 -
Viun9g01253 965 Pfam Leucine Rich Repeat 798 818 IPR001611 GO:0005515
Viun9g01253 965 Pfam Leucine Rich Repeat 822 844 IPR001611 GO:0005515
Viun9g01253 965 Gene3D Ribonuclease Inhibitor 34 183 IPR032675 -
Viun9g01253 965 Pfam Leucine rich repeat 82 137 IPR001611 GO:0005515
Viun9g01253 965 PRINTS Leucine-rich repeat signature 103 116 - -
Viun9g01253 965 PRINTS Leucine-rich repeat signature 292 305 - -
Viun9g01253 965 ProSiteProfiles Leucine-rich repeat profile. 246 268 IPR001611 GO:0005515
Viun9g01253 965 Pfam Leucine rich repeat N-terminal domain 40 72 IPR013210 -
Viun9g01253 965 SUPERFAMILY RNI-like 346 689 - -
Viun9g01253 965 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 478 574 - -
Viun9g01253 965 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 286 381 - -
Viun9g01253 965 FunFam Uncharacterized protein 382 477 - -
Viun9g01253 965 ProSiteProfiles Leucine-rich repeat profile. 822 843 IPR001611 GO:0005515
Viun9g01253 965 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 34 190 - -
Viun9g01253 965 SUPERFAMILY L domain-like 645 860 - -
Viun9g01253 965 Gene3D Ribonuclease Inhibitor 314 506 IPR032675 -
Viun9g01253 965 Gene3D Ribonuclease Inhibitor 247 313 IPR032675 -
Viun9g01253 965 Gene3D Ribonuclease Inhibitor 184 246 IPR032675 -
Viun9g01253 965 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 777 915 - -
Viun9g01253 965 FunFam Uncharacterized protein 191 285 - -
Viun9g01253 965 SUPERFAMILY L domain-like 38 307 - -
Viun9g01253 965 SMART LRR_typ_2 627 651 IPR003591 -
Viun9g01253 965 SMART LRR_typ_2 292 315 IPR003591 -
Viun9g01253 965 SMART LRR_typ_2 723 747 IPR003591 -
Viun9g01253 965 SMART LRR_typ_2 388 412 IPR003591 -
Viun9g01253 965 SMART LRR_typ_2 484 508 IPR003591 -
Viun9g01253 965 SMART LRR_typ_2 196 219 IPR003591 -
Viun9g01253 965 SMART LRR_typ_2 796 819 IPR003591 -
Viun9g01253 965 SMART LRR_typ_2 820 843 IPR003591 -
Viun9g01253 965 SMART LRR_typ_2 148 172 IPR003591 -
Viun9g01253 965 SMART LRR_typ_2 316 339 IPR003591 -
Viun9g01253 965 SMART LRR_typ_2 675 699 IPR003591 -
Viun9g01253 965 SMART LRR_typ_2 244 268 IPR003591 -
Viun9g01253 965 SMART LRR_typ_2 100 124 IPR003591 -
Viun9g01253 965 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 575 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01253 Viun-Chr9 12139961 12143263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01253 50 887 Receptor kinase-like Gene Family AT5G46330 33.884 7.97e-122 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01253 - - gmx:100802757 1568.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01253 9 12139961 12143263 Viun9g01253 9 12139961 12143263 ECH
Viun3g04403 3 51859448 51862913 Viun9g01253 9 12139961 12143263 PCT