Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04403 ATGAAACTCATACCTGTCAGACATTCTGCAATGGGTTCCATTTGGATGTGCCATTTCTTTCTGTTACTGTTCATACTAGATACTTCTTTAATTGCAAGTATGGCCAATAATGCAACAGATTCCTACTGGCTTATCAGAATCAAATCAGAGTTGGTAGATCCATCAGGAGCACTTGGCAACTGGTCTCCGACAACTCATGTCTGCGACTGGAATGGAGTAACATGTGCAGTTGATCAGGAACATGTTATTGCCCTGAACCTGTCTGGTTCAGGAATATCCGGTTCCATTTCAGTTGAGTTCAGACACCTCTCTTCTATTCAAACACTTGATTTGTCTTCAAATTCTCTTTCTGGCTCCATCCCTTCGGAGCTGGGTCAGCTTCAGAATCTAAGAATATTGCAACTATACTCAAATGATCTCTCTGGGAACATTCCTGCAGAGATAGGTAACATGAGGAAGTTGCAAATTCTTAGAATAGGTGACAACATGTTGAGTGGTGAAATTCCACCTAGTATTGCCAATTTGAGTGAATTGACAGTTCTGGCGATAGGATTCTGCCACTTGAATGGAAGCATACCAGTTGGGATTGGTAAGTTGAAGCATCTAATATCGCTTGATTTAGAAATGAACAGCCTTAGTGGGCCCATACCTGAAGAGATTCAAGGCTGTGAAGAGCTCCAAAACTTTGCAGCATCAAACAACATGCTTGAAGGAGACATACCTTTCTCTATGGGGTCGCTTAAATCATTAAAAATTCTGAATCTGGCCAATAACAGTTTGTCTGGGTCAATTCCTCATGCTTTGAGTCATCTTTCTAACTTGACTTACCTGAATTTGCTTGGAAACAAACTGCATGGAGAAATTCCTTCTGCGCTTAATAGTCTGATTCAGCTGCAGAAGTTAGACTTGTCCAAAAACAACCTCTCTGGATCAATACCTCTCCTTAATGTAGAATTGCAGAGTCTTGAAACTCTTGTTCTGTCTGATAATGCTCTGACCGGTAGCATTCCAAGTAACTTCTGCCTCAGAGGTTCAAAGCTTCGGCAACTCTTTTTGTCTAGCAACATGCTCTCTGGCAAGTTTCCTCTGGAGTTGCTCAACTGCTCCTCAATACAACAGTTGGACCTTTCCGATAACAGTTTTGAAGGAGAACTTCCTGCAAGCCTGGATAAACTGAAGGACCTCACAGATCTTGTTCTCAACAACAACAGCTTTGTTGGATCTATACCTCCTGAAATTGGAAACATTAGTAGCTTAGAGGGTCTTTTCCTATTTGGTAACTTCTTGACAGGTAAAATTCCAATGGAGATTGGAAGGCTGCAGAGATTGAGCACCATTTACCTCTATGACAACCAGATGTCAGGACTCATACCAAGAGAGATAACAAACTGCACAAGCTTAGAGGAAATTGACTTCTTTGGAAATCACTTCACAGGGCCCATTCCAGAGACTATAGGTAAGCTCAAGGACTTGGTTGTTCTGCATCTTAGGCAGAATGACTTGTCTGGTCCCATCCCACCAAGCATGGGGTACTGTAAAAACCTTCAGATATTGGCCTTAGCAGATAACACGTTGTCTGGTTCCATTCCATCTACATTCAGTTACCTCTCGGAACTCACCAAAATTACCCTTTACAACAACTCCTTTGAAGGGCCTCTCCCTCATTCACTCTCTTCTCTCAAAAGCCTGAAAATCATCAACTTTTCACACAACAAGTTCACTGGAAATTTCTTTCCTCTCACTGGTTCAAATTCTCTTACCATTCTGGACTTGACCAACAACAGTTTCTCAGGTCCCATCCCTTCCACTCTAGCCAATTCTAGAAACCTCAGCCGTCTCAGACTTGGACAAAATTATCTCACTGGAAGCATTCCTCCTGAATTTCACCAACTCACGGAGCTCAACTTTCTTGATTTATCATTCAACAATTTAACAGGAGAAATGCCACCTCAACTCTCAAACTCCAAGAAAATTGAACACATCCTCATGAGTAACAACAGGTTGAGTGGCAAATTACCTGTTTGGTTGGGAAGCTTACAAGAACTTGGTGAACTAGATCTCTCATACAATAACTTCAGTGGGAGGGTACCTTCTGAGCTTGGTAACTGCTCCAAATTGCTCAAGCTTTCTCTCCATCACAACAATCTGACCGGTGAAATCCCCCTAGAGCTTGGAAACCTCACTGCCCTCAATGTCTTTAATTTGCAAAGGAACGGATTCTCTGGCCCCATTCCTCCGACAATGCAGCAATGCACAAAACTGTATGAGCTTAGGCTCTCAGAGAACTTTTTAACAGGTAACATACCAGTTGAGCTAGGAGGGCTTGCTGAGTTGCAAGTGATTTTGGACTTGAGTAAAAATCTCTTCACCGGTGAGATTCCACCATCTCTTGGAAACCTCATGAAGCTAGAGAGACTCAACCTCTCTTTCAACCAACTTGAAGGAAAATTTCCTCCTTCACTGGGCAAACTCACAAGCCTGCACGTGTTGAATCTCTCAAACAACCATCTTGAAGGCCAGATTCCTCCAACATTTTCAGGATTCCCACTAAGCTCGTTCCTGAACAATCAGGGCTTGTGTGGCCCACCACTGAGATCATGCTCTGAATCCACGGCACAGGGGAAAATGCAGCTATCAAACACACAAGTGGCAGCAATCATTGTGGCCATTGTGTTTACTTCCACAGTGATATGCTTAGTGATGTTGTACCTGATGCTCAGGATCTGGTGCAACTGGAGAAAAGTTGCCATTTCGAGTGCAGAAGGTGGCACTGTTGCCCACAAGATAAGGAATGGAGAGTATTGGAACATGAATTCATTTGGGTTTATTCCTTCACCAGATAAGCAGAATTCAGCAGCAACTTCCTTCTACAATATTAAAATGGAGACCATGGAAAATGCACATATGTAA 2910 0.4268 MKLIPVRHSAMGSIWMCHFFLLLFILDTSLIASMANNATDSYWLIRIKSELVDPSGALGNWSPTTHVCDWNGVTCAVDQEHVIALNLSGSGISGSISVEFRHLSSIQTLDLSSNSLSGSIPSELGQLQNLRILQLYSNDLSGNIPAEIGNMRKLQILRIGDNMLSGEIPPSIANLSELTVLAIGFCHLNGSIPVGIGKLKHLISLDLEMNSLSGPIPEEIQGCEELQNFAASNNMLEGDIPFSMGSLKSLKILNLANNSLSGSIPHALSHLSNLTYLNLLGNKLHGEIPSALNSLIQLQKLDLSKNNLSGSIPLLNVELQSLETLVLSDNALTGSIPSNFCLRGSKLRQLFLSSNMLSGKFPLELLNCSSIQQLDLSDNSFEGELPASLDKLKDLTDLVLNNNSFVGSIPPEIGNISSLEGLFLFGNFLTGKIPMEIGRLQRLSTIYLYDNQMSGLIPREITNCTSLEEIDFFGNHFTGPIPETIGKLKDLVVLHLRQNDLSGPIPPSMGYCKNLQILALADNTLSGSIPSTFSYLSELTKITLYNNSFEGPLPHSLSSLKSLKIINFSHNKFTGNFFPLTGSNSLTILDLTNNSFSGPIPSTLANSRNLSRLRLGQNYLTGSIPPEFHQLTELNFLDLSFNNLTGEMPPQLSNSKKIEHILMSNNRLSGKLPVWLGSLQELGELDLSYNNFSGRVPSELGNCSKLLKLSLHHNNLTGEIPLELGNLTALNVFNLQRNGFSGPIPPTMQQCTKLYELRLSENFLTGNIPVELGGLAELQVILDLSKNLFTGEIPPSLGNLMKLERLNLSFNQLEGKFPPSLGKLTSLHVLNLSNNHLEGQIPPTFSGFPLSSFLNNQGLCGPPLRSCSESTAQGKMQLSNTQVAAIIVAIVFTSTVICLVMLYLMLRIWCNWRKVAISSAEGGTVAHKIRNGEYWNMNSFGFIPSPDKQNSAATSFYNIKMETMENAHM 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04403 969 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 37 193 - -
Viun3g04403 969 FunFam Uncharacterized protein 194 288 - -
Viun3g04403 969 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 482 578 - -
Viun3g04403 969 Pfam Leucine rich repeat 585 644 IPR001611 GO:0005515
Viun3g04403 969 Pfam Leucine rich repeat 233 284 IPR001611 GO:0005515
Viun3g04403 969 Pfam Leucine rich repeat 514 573 IPR001611 GO:0005515
Viun3g04403 969 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 579 871 - -
Viun3g04403 969 Gene3D Ribonuclease Inhibitor 520 871 IPR032675 -
Viun3g04403 969 PRINTS Leucine-rich repeat signature 298 311 - -
Viun3g04403 969 PRINTS Leucine-rich repeat signature 824 837 - -
Viun3g04403 969 ProSiteProfiles Leucine-rich repeat profile. 297 319 IPR001611 GO:0005515
Viun3g04403 969 FunFam Uncharacterized protein 386 481 - -
Viun3g04403 969 Gene3D Ribonuclease Inhibitor 292 438 IPR032675 -
Viun3g04403 969 SUPERFAMILY L domain-like 64 380 - -
Viun3g04403 969 SUPERFAMILY RNI-like 350 693 - -
Viun3g04403 969 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 289 385 - -
Viun3g04403 969 Gene3D Ribonuclease Inhibitor 439 516 IPR032675 -
Viun3g04403 969 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 781 919 - -
Viun3g04403 969 SMART LRR_typ_2 775 800 IPR003591 -
Viun3g04403 969 SMART LRR_typ_2 824 847 IPR003591 -
Viun3g04403 969 SMART LRR_typ_2 319 343 IPR003591 -
Viun3g04403 969 SMART LRR_typ_2 631 655 IPR003591 -
Viun3g04403 969 SMART LRR_typ_2 151 175 IPR003591 -
Viun3g04403 969 SMART LRR_typ_2 271 295 IPR003591 -
Viun3g04403 969 SMART LRR_typ_2 199 222 IPR003591 -
Viun3g04403 969 SMART LRR_typ_2 247 270 IPR003591 -
Viun3g04403 969 SMART LRR_typ_2 488 512 IPR003591 -
Viun3g04403 969 SMART LRR_typ_2 679 703 IPR003591 -
Viun3g04403 969 SMART LRR_typ_2 392 416 IPR003591 -
Viun3g04403 969 SMART LRR_typ_2 103 127 IPR003591 -
Viun3g04403 969 Pfam Leucine rich repeat N-terminal domain 39 75 IPR013210 -
Viun3g04403 969 Gene3D Ribonuclease Inhibitor 37 191 IPR032675 -
Viun3g04403 969 Gene3D Ribonuclease Inhibitor 192 291 IPR032675 -
Viun3g04403 969 SUPERFAMILY L domain-like 654 865 - -
Viun3g04403 969 Pfam Leucine Rich Repeat 826 848 IPR001611 GO:0005515
Viun3g04403 969 Pfam Leucine Rich Repeat 802 824 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04403 Viun-Chr3 51859448 51862913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04403 53 868 Receptor kinase-like Gene Family AT5G46330 35.480 4.49e-126 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04403 - - gmx:100818792 1650.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04403 3 51859448 51862913 Viun3g04403 3 51859448 51862913 ECH
Viun3g04403 3 51859448 51862913 Viun9g01253 9 12139961 12143263 PCT