Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01234 ATGATGCATTCGTTGTTGAACGCAAAGACATGCGTGGGTGTGCTGTCACCGGTTATAGCGAACTCCGAGGAAAGGAGTTCGAGGAGGATGATGCAAAGCGTGAATTGTAGGAACAGTAGGAATTGGAGGAATGTGGCTGTGTCGTGCGGTTCGGAGAAGAACGGGAACGATGGAATTGGCGCGAGTGAAGGGTTGAATTCGGAGTCGTTTTTGTCTCCGAGTCACAATTACGCGATCCTGAAGCACCGGATGGAGATAGCGGCAAAGTCCGAGTATTATGAAGAGGCTGCAAGGCTTCGTGACTCGCTCAAATGCTTCGAGGACGAGGTTCCTGTTCTGCGTCTGCGGAGGCTGTTGAAAGAAGCTGTTGCTGATGAGAGATTTCAGGATGCAGCTATATATCGTGATCAGCTCAAACAAATTGCTCCACATTCTCTCTTAAAATGTTCAAGTGATTCTACAACCTTGGGAATTCGGGTTCAAGTTAAGAGTGTGTATTTAGAGGGCAGAAGTCAACCAACAGAAGAGGTATATTTCTTTGAATATAAAATAAGAATTACCAATAACACAAACCGCCCTGTTCAACTTCTGAGAAGGCACTGGATTATAACTGATGCTAATGGAAAAACTGAAAATTTCTGGGGAATTGGGGTTGGTGGTGAACAGCCAGCTATATTTCCTAGAAGTAGTTTTGAATTCTCTTCTACATGCCCATTAAACGCACAAAATGGTAGAATGGAAGGTGACTTTGAGCTGATACACGTTGATCGAGTAGGTCCAAGAGCATTTAACGTGGCTGTTGCCCCTTTTTCCCTCTCTCTACTCGGAGATGATGATGACGATGGTGAAGCTATCTGA 858 0.4499 MMHSLLNAKTCVGVLSPVIANSEERSSRRMMQSVNCRNSRNWRNVAVSCGSEKNGNDGIGASEGLNSESFLSPSHNYAILKHRMEIAAKSEYYEEAARLRDSLKCFEDEVPVLRLRRLLKEAVADERFQDAAIYRDQLKQIAPHSLLKCSSDSTTLGIRVQVKSVYLEGRSQPTEEVYFFEYKIRITNNTNRPVQLLRRHWIITDANGKTENFWGIGVGGEQPAIFPRSSFEFSSTCPLNAQNGRMEGDFELIHVDRVGPRAFNVAVAPFSLSLLGDDDDDGEAI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01234 285 ProSiteProfiles UVR domain profile. 109 144 IPR001943 GO:0005515
Viun9g01234 285 SUPERFAMILY ApaG-like 154 273 IPR036767 -
Viun9g01234 285 Coils Coil 89 109 - -
Viun9g01234 285 Pfam UvrB/uvrC motif 114 141 IPR001943 GO:0005515
Viun9g01234 285 ProSiteProfiles ApaG domain profile. 152 279 IPR007474 -
Viun9g01234 285 Pfam ApaG domain 170 252 IPR007474 -
Viun9g01234 285 Gene3D ApaG domain 148 279 IPR036767 -
Viun9g01234 285 PANTHER OS05G0170800 PROTEIN 23 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01234 Viun-Chr9 11872556 11875391 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01234 - K06195 gmx:100799029 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01234 9 11872556 11875391 Viun9g01234 9 11872556 11875391 ECH
Viun3g04409 3 51904030 51909750 Viun9g01234 9 11872556 11875391 PCT