Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04409 ATGCAATCGTTATCGTTAAGTGTGAGTCTGAGGAGTAGTAGTGCAGGGAATTTACTGTTGCTGGGTTCGGAGGCGAGAGTGAGAAGAAGATGTAGAAGTGTGGTCGTAGCTTGTGCTTCGGAGGGAGACAGTGGTGGCAGTAGCACTAGCTCCTTTCTTTCTCGGACCCAAACCTACGCTCTTCTCAAGCAACAGTTGCAAGTAGCTGCTAAATCTGAGGATTACAAGGAAGCTGCCAGAATTCGAGATTCGTTGAAGTTGTTTGAGGACGAGGAGCCTGTGTTGCGTCTGAGGAGACTATTGAAGGAAGCAATTGCGGAAGAGAGATTCCAGGATGCCGCTAGTTATCGTGATGAGCTAAAAAAAATTGCCCCACACTCTCTTTTAAAATGCTGCAGTGATGCTACAACTTTGGGAATTAGGGTTCAAGTTAGGAGTGTATATATAGAGGGCAGAAGTCAGCCTTCAAAGGGGTTATACTTCTTCGCATATAGAATAAGAATTACCAATAACTCAGACCACCCTGTTCAACTTCTTAGAAGGCATTGGATTATAACTGATGCTAATGGGAAGACGGAAAATGTCTGGGGAATTGGAGTTGTTGGTGAACAGCCGTTAATACTTCCTGGGAATAGTTTTGAATACTCTTCAGCCTGCCCACTGAGCACACCAAATGGGAGAATGGAAGGTGACTATGAAATGATCCATGTCGAAAGAGTAGGCTCACGATCATTCAATGTGGCCATTGCCCCGTTTTCTCTCTCTCTTCTTGGAGATGACGAAGGTTGTAATATTTGA 798 0.4461 MQSLSLSVSLRSSSAGNLLLLGSEARVRRRCRSVVVACASEGDSGGSSTSSFLSRTQTYALLKQQLQVAAKSEDYKEAARIRDSLKLFEDEEPVLRLRRLLKEAIAEERFQDAASYRDELKKIAPHSLLKCCSDATTLGIRVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSDHPVQLLRRHWIITDANGKTENVWGIGVVGEQPLILPGNSFEYSSACPLSTPNGRMEGDYEMIHVERVGSRSFNVAIAPFSLSLLGDDEGCNI 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04409 265 ProSiteProfiles UVR domain profile. 91 126 IPR001943 GO:0005515
Viun3g04409 265 Pfam UvrB/uvrC motif 62 89 IPR001943 GO:0005515
Viun3g04409 265 Pfam UvrB/uvrC motif 96 123 IPR001943 GO:0005515
Viun3g04409 265 ProSiteProfiles ApaG domain profile. 134 261 IPR007474 -
Viun3g04409 265 PANTHER OS05G0170800 PROTEIN 40 261 - -
Viun3g04409 265 Hamap Protein ApaG [apaG]. 133 264 IPR023065 -
Viun3g04409 265 ProSiteProfiles UVR domain profile. 56 91 IPR001943 GO:0005515
Viun3g04409 265 SUPERFAMILY ApaG-like 136 255 IPR036767 -
Viun3g04409 265 Pfam ApaG domain 152 235 IPR007474 -
Viun3g04409 265 Gene3D ApaG domain 130 260 IPR036767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04409 Viun-Chr3 51904030 51909750 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04409 - K06195 gmx:100784413 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04409 3 51904030 51909750 Viun3g04409 3 51904030 51909750 ECH
Viun3g04409 3 51904030 51909750 Viun9g01234 9 11872556 11875391 PCT