Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01201 ATGAGCTTTTATATCATGGAAGAGTTGAAGATGACAGGAAATGTTGCGAACGGTGTTCATGTTGAAGGGGAAGGTAATGAGATGAATGTGAACCCTGATTCCCTTTCTAAGGAAACCTTTAGTCAGGGAAAAGGTGAAGGCGGTACTGCTAATTTTGGTGTTGATGGGGTGGTTGAGCCCTCCATTGAACAGCTTTATGAGAATGTGTGTGACATGCAGAGTTCGGATCAGTCACCGTCGCGGCAAAGTTTTGGATCTGATGGCGATGAGTCTAGAATCGATTCTGAATTGCGCCATCTAGTTGGAGGACGGATGAGGGAGGTAGAGATAATGGAAGAGGAAGTTGGGGAGGAGAAAGGGCATGACAGGAGCTCAAGTAGTGAAATATCTTCCGGATTGGATGGCTTGACCAATGATAAGAAATTGGATCAGGTGAATGAGATTCAGGAGGTTCAGCCTGCAGCTACTAGTTCTGGTTCCTCGGTAAAGTCTGTTAAAGCATCGAGTTCACGGATAGGACCTGATACTTCGCCCAAATCAACAGCCAAGGGAAAAAGTCCTGCCCCGAAACCTCCTATCGAAAGAAAGAACGGTAGGCCTTCGAGGAAACAAAGTAGTGGTGTTAGTGGTGTTACTGGCGTGAAGAATTTGAAGAATTCTCCTTTGGGAAATAAGTCAGTGTCACAAAACCGTGTTGAGAAAAGGGCCGAGTCCGTATTAGACAGACCTGAGAGGGCACCGATATTACTAAAACAAGCAAGAGATATGATTTCATTCGGGGATAGTCCTTATAAGGCTCTTGACTTAGCTCTTCAAGCAATGAAACTGTTTGAGAAGTTAGGTGATGAGAAACCGAGTTTGGAGCTGGTTATGTGTTTACATGTTATTTCAGCAATACATTGCAGCTTGGGTCAATATGGTGAGGCAATTCCAATTCTTGAACGGTCAATTGAGATTCCTGTTATTGGGGAAAGTCAGGAACATGCCCTTGCTAAATTTGCTGGTCACATGCAACTGGGAGACACCTATGCTATGCTGGGCCAGCTTGAGAATTCAATTAAGTGCTATACCACTGGATTAGAAGTCCAGAAGCAGGTTTTGGGAGATACAGACCCAAGAGTTGGTGAAACTTGTCGGTACGTGGCTGAAGCCAATGTTCAGGCTTTGCGATTTGATGAAGCTGAGAGGCTTTGTCAGATGGCTCTAGACATTCATAAAGCAAATAATTCAGCTCCATCTCTTGAAGAGGCAGCTGATAGGAGGCTCATGGGCCTTGTATGTGATACAAAGGGAAATCACGAAGCTGCTCTTGAGCATCTTGTTCTAGCCAGCATGGCAATGGTCGCTAATGGCCAGGAAGGGGATGTGGCTTCTGTTGACTGCAGCATTGGAGACGCATACTTATCTTTGTCTCGATATGATGAAGCTATCTTTGCGTATCAGAAAGCTTTAACAGCTTTCAAGACCAACAAAGGAGAGAATCATCCAGCAGTGGGATTTGTCTTTGTGCGTTTGGCTGACTTGTATAACAGGATAGGGAAGATAAGGGAATCAAAATCATATTGTGAGAGTGCACTTAAAATATACGAGAATCCACTTCCTGGAGTTCCTCTAGAGGAGATTGCTAGTGGTCTTACAAATATTTCAACTATCTATGAGTCTATGAATGAGCTTGAACGGGCTCTGAAGTTACTGCAGAAAGCACTGGAGATATACAATGATGTCCCTGGTCAGCAAAGCACAATAGCTGGAATTGAAGCTCAGATGGGAGTCATGTACTACATGTTGGGGAACTTTTCTGAATCTTACGAAACTTTGAAGACTGCTATTTCAAAGCTTCGTGCTATTGGAGAAAAGAAATCATCTTTCTTTGGTATTGCTCTTAATCAAATGGGACTTGCCTGTGTGCAACGGTATGCCTTAAGTGAGGCTACAGAATTATTTGAAGAAGCAAAGAGTATTTTGGAACAAGAATATGGTCCGTATCACCCAGAAACACTTGGGGTATGCAGTAATCTTGCTGGCACATACGATGCAATTGGCAGAATGGATGATGCAATTCAAATTCTGGAGTACGTTGTTAGCGCGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGACGTGGATGATGAGAAGAAAAGGTTGGGTGAGTTGTTGAAGGAAGCAGGAAGAGTTCGGAGCAGAAAAGGCAGGTCACTGGAGAACCTTCTTGATGGCAATGCTCACACTGTAAACAATGTTGTCATCAGGGTCTGA 2256 0.4397 MSFYIMEELKMTGNVANGVHVEGEGNEMNVNPDSLSKETFSQGKGEGGTANFGVDGVVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEVGEEKGHDRSSSSEISSGLDGLTNDKKLDQVNEIQEVQPAATSSGSSVKSVKASSSRIGPDTSPKSTAKGKSPAPKPPIERKNGRPSRKQSSGVSGVTGVKNLKNSPLGNKSVSQNRVEKRAESVLDRPERAPILLKQARDMISFGDSPYKALDLALQAMKLFEKLGDEKPSLELVMCLHVISAIHCSLGQYGEAIPILERSIEIPVIGESQEHALAKFAGHMQLGDTYAMLGQLENSIKCYTTGLEVQKQVLGDTDPRVGETCRYVAEANVQALRFDEAERLCQMALDIHKANNSAPSLEEAADRRLMGLVCDTKGNHEAALEHLVLASMAMVANGQEGDVASVDCSIGDAYLSLSRYDEAIFAYQKALTAFKTNKGENHPAVGFVFVRLADLYNRIGKIRESKSYCESALKIYENPLPGVPLEEIASGLTNISTIYESMNELERALKLLQKALEIYNDVPGQQSTIAGIEAQMGVMYYMLGNFSESYETLKTAISKLRAIGEKKSSFFGIALNQMGLACVQRYALSEATELFEEAKSILEQEYGPYHPETLGVCSNLAGTYDAIGRMDDAIQILEYVVSAREEKLGTANPDVDDEKKRLGELLKEAGRVRSRKGRSLENLLDGNAHTVNNVVIRV 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01201 751 MobiDBLite consensus disorder prediction 71 86 - -
Viun9g01201 751 MobiDBLite consensus disorder prediction 71 138 - -
Viun9g01201 751 MobiDBLite consensus disorder prediction 151 239 - -
Viun9g01201 751 Coils Coil 548 575 - -
Viun9g01201 751 MobiDBLite consensus disorder prediction 202 229 - -
Viun9g01201 751 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 53 741 - -
Viun9g01201 751 MobiDBLite consensus disorder prediction 151 183 - -
Viun9g01201 751 MobiDBLite consensus disorder prediction 24 49 - -
Viun9g01201 751 Pfam Tetratricopeptide repeat 337 364 IPR019734 GO:0005515
Viun9g01201 751 Gene3D Tetratricopeptide repeat domain 234 443 IPR011990 GO:0005515
Viun9g01201 751 ProSiteProfiles TPR repeat profile. 542 575 IPR019734 GO:0005515
Viun9g01201 751 SUPERFAMILY TPR-like 336 692 IPR011990 GO:0005515
Viun9g01201 751 SMART tpr_5 375 408 IPR019734 GO:0005515
Viun9g01201 751 SMART tpr_5 333 366 IPR019734 GO:0005515
Viun9g01201 751 SMART tpr_5 583 616 IPR019734 GO:0005515
Viun9g01201 751 SMART tpr_5 667 700 IPR019734 GO:0005515
Viun9g01201 751 SMART tpr_5 457 490 IPR019734 GO:0005515
Viun9g01201 751 SMART tpr_5 542 575 IPR019734 GO:0005515
Viun9g01201 751 SMART tpr_5 625 658 IPR019734 GO:0005515
Viun9g01201 751 SMART tpr_5 499 532 IPR019734 GO:0005515
Viun9g01201 751 SUPERFAMILY TPR-like 265 361 IPR011990 GO:0005515
Viun9g01201 751 ProSiteProfiles TPR repeat profile. 457 490 IPR019734 GO:0005515
Viun9g01201 751 Gene3D Tetratricopeptide repeat domain 444 623 IPR011990 GO:0005515
Viun9g01201 751 Gene3D Tetratricopeptide repeat domain 655 729 IPR011990 GO:0005515
Viun9g01201 751 SUPERFAMILY TPR-like 583 725 IPR011990 GO:0005515
Viun9g01201 751 Pfam Tetratricopeptide repeat 626 694 - -
Viun9g01201 751 Pfam Tetratricopeptide repeat 455 531 - -
Viun9g01201 751 MobiDBLite consensus disorder prediction 29 46 - -
Viun9g01201 751 MobiDBLite consensus disorder prediction 87 125 - -
Viun9g01201 751 Pfam Tetratricopeptide repeat 542 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01201 Viun-Chr9 11187340 11190641 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01201 - - gmx:100783201 1165.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04431 3 52080799 52084025 Viun9g01201 9 11187340 11190641 ECH
Viun9g01201 9 11187340 11190641 Viun9g01201 9 11187340 11190641 ECH
Viun3g04431 3 52080799 52084025 Viun9g01201 9 11187340 11190641 PCT