Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04431 ATGGGAGTTAACGATGAAAGGGGAGTAAATGTAATGAATAGGTTTGGTTACACTTTACCCTTTAATGGAACATCAAGTCCAAAGAGTTCCTTGAGTGAAGAAAGACGCCAAAGTATTGGTCCAACTTTTCATGTTGAGAGGGTGGTTGAAAGTCCCGTAATTCAACGGCTTCATGGAAATGCTTGTGACATGCAGAGCTCTGATCAATCATCCTCAAGGCGAATTTTTGGATACGATGGCAGTGAGTCCAGATCCTATTCATCAAAATTGTTCTCTCTATTTGGAGGGCAGAAGAGAGAGGAGGAGATAGTGAAAGATGAAGTGGAGAAAAAGAAACAAGGGAATTCTAGCAGGGAAATTCCTTCCACAATGAGTGATAAGAAGCTAGATAAGGTGGGTGAGACTCAGACAAGAACTTTAAGCTGTGTTGTTTCACAAAAACCAAAGAAAGTGTCACAATTGTTCCCAGAAAATCCATCAAAGGCAAGATCACCAATAGCAAAAAGCCCTACTGCAAAACCTCCTATTGATAGGAAAAATGACAGCCCTATGAAAAAACAGAACGCAGCTGTTCACCGTGTGAAGAAAACTGTTGGTGGAAGATCACTGTCTTCAGGTCAAATTGAGATTTCCTCTGGGACAGCATTGGATAAGCCTGAACTGGGACAAGCTTTGCTAAACCAAGCAAGGGACGTAATTTCATCTGGAACTAATCGAACGAGAGCTCTTGAATTAGCCCTTCAAGCAAAGAAACTGTTTGAGAGAAATGCTGCTTATGGGAGACCAAATTTGGACCTGGCCATGTGTTTACATGTTACTGCAGTGATACATTGCACTCTGGGCAATTTCAATGAAGCAATTCCGCTAGTAGAGCGCTCAATCGAGATTCCTGCTATTGAAGAAGGCCAACAGCACGCCATTGCTAAATTCGCAGGCCACATGCATCTGGGAGACATTTATGCTATGTCGGGGCAGCTGGAGAAGTCAATCAAGTGCTACATGGAAGGGTTAGAATTACAGAAGAAGGTTTTGGGAGAAACAGACGCAAGAGTTGGCGAAACATGTAGGTATGTGGCTGAGGCTAACTTTCATGCATTGCAATTTGAGGAGGCGGAGAGGATGTGCCAAACAGCCCTTGATATCCACAGAGCAAATGGTTCACCCTCATCTCTTGAAGAGGCTGCTGATAGGAGGTTGATGGGGCTTATATGCGAAGCAGATGGTAAACACGAAGCAGCCCTGGAGCATCTTGTGTTGGCCAGCATGGCAATGGTGGCAAATGGGCAAGAAGTGGAAGTGGCGTTTGTTGACTGCAACATTGGAGACACGTACTTATCCTTGGCTAGATATGATGAAGCCATCTTTGGATATCAGAGAGCATTGAGGGTTTTCAAGATCCACAAAGGTGAGAACCACCCTGCTGTGGGATCAGTTTATGTGCGTCTGGCTGACTTGTATAGCAGAACATGGAAGATTAAGGAGTCAAAATTATACTGTGAGGAGGCACTTAAAATCTATGAGAATCCCATGCCTGGGGTCCCTCCAGAGGAAACTGCAAACGGTTTTATGAATGTCTCAGCCATCTACGAGTCGATAAATGAGCTAGAAGAGGCACTTAAATTGCTTCACAAGGCACTAACCATACTTAATGATGTCTCTGGTCAGATAAACACCATAGCAGGAATTGAAGCTCAGATGGGGGTGATGTACTTTGTGTTGAAGAACTACACTGAATCTTATAACTGTCTCAAGAATGCCGTGTCCAAGCTTCGTGCTAGTGGAGGAAAGAAATCAGCTTTCTTTGGTACTGTTCTTAATCAAATGGGACTTGCTTGTGTTCAACTCCATTCCCTGGATGAGGCTGCAGCATTATTTGAAGAAGCAAGGGCCATTTTGGAACAAGAGAATGGACCCTATCACACTGAAACACTTGGAGTATGTGGCAATCTTGCTGGAACATATGATGCAACTGGAAGGCTGGATGAGGCAATTGAAATTCTTGAAAACATTGTGGTAATGAGGGAGGAAAAGCTTGGGACTGCAAATCCTGATGTTGCTGATGAGAAGAGAAGGTTGGAGGAGTTGTTGAAGGAAACAGGGAAAGTTCGGAACAGAAAAACTAAGTCACTGGAGAACCTTTTTGATCATGATTATATATGA 2160 0.4352 MGVNDERGVNVMNRFGYTLPFNGTSSPKSSLSEERRQSIGPTFHVERVVESPVIQRLHGNACDMQSSDQSSSRRIFGYDGSESRSYSSKLFSLFGGQKREEEIVKDEVEKKKQGNSSREIPSTMSDKKLDKVGETQTRTLSCVVSQKPKKVSQLFPENPSKARSPIAKSPTAKPPIDRKNDSPMKKQNAAVHRVKKTVGGRSLSSGQIEISSGTALDKPELGQALLNQARDVISSGTNRTRALELALQAKKLFERNAAYGRPNLDLAMCLHVTAVIHCTLGNFNEAIPLVERSIEIPAIEEGQQHAIAKFAGHMHLGDIYAMSGQLEKSIKCYMEGLELQKKVLGETDARVGETCRYVAEANFHALQFEEAERMCQTALDIHRANGSPSSLEEAADRRLMGLICEADGKHEAALEHLVLASMAMVANGQEVEVAFVDCNIGDTYLSLARYDEAIFGYQRALRVFKIHKGENHPAVGSVYVRLADLYSRTWKIKESKLYCEEALKIYENPMPGVPPEETANGFMNVSAIYESINELEEALKLLHKALTILNDVSGQINTIAGIEAQMGVMYFVLKNYTESYNCLKNAVSKLRASGGKKSAFFGTVLNQMGLACVQLHSLDEAAALFEEARAILEQENGPYHTETLGVCGNLAGTYDATGRLDEAIEILENIVVMREEKLGTANPDVADEKRRLEELLKETGKVRNRKTKSLENLFDHDYI 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04431 719 Gene3D Tetratricopeptide repeat domain 421 592 IPR011990 GO:0005515
Viun3g04431 719 SMART tpr_5 434 467 IPR019734 GO:0005515
Viun3g04431 719 SMART tpr_5 352 385 IPR019734 GO:0005515
Viun3g04431 719 SMART tpr_5 267 300 IPR019734 GO:0005515
Viun3g04431 719 SMART tpr_5 476 509 IPR019734 GO:0005515
Viun3g04431 719 SMART tpr_5 644 677 IPR019734 GO:0005515
Viun3g04431 719 SMART tpr_5 519 552 IPR019734 GO:0005515
Viun3g04431 719 SMART tpr_5 310 343 IPR019734 GO:0005515
Viun3g04431 719 SMART tpr_5 602 635 IPR019734 GO:0005515
Viun3g04431 719 SMART tpr_5 560 593 IPR019734 GO:0005515
Viun3g04431 719 MobiDBLite consensus disorder prediction 174 188 - -
Viun3g04431 719 Coils Coil 532 552 - -
Viun3g04431 719 MobiDBLite consensus disorder prediction 63 83 - -
Viun3g04431 719 MobiDBLite consensus disorder prediction 135 159 - -
Viun3g04431 719 Pfam MalT-like TPR region 269 434 IPR041617 -
Viun3g04431 719 Pfam Tetratricopeptide repeat 603 668 - -
Viun3g04431 719 Pfam Tetratricopeptide repeat 436 508 - -
Viun3g04431 719 SUPERFAMILY TPR-like 430 552 IPR011990 GO:0005515
Viun3g04431 719 Coils Coil 685 705 - -
Viun3g04431 719 Coils Coil 573 593 - -
Viun3g04431 719 ProSiteProfiles TPR repeat profile. 519 552 IPR019734 GO:0005515
Viun3g04431 719 ProSiteProfiles TPR repeat profile. 434 467 IPR019734 GO:0005515
Viun3g04431 719 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 45 716 - -
Viun3g04431 719 Gene3D Tetratricopeptide repeat domain 205 420 IPR011990 GO:0005515
Viun3g04431 719 MobiDBLite consensus disorder prediction 107 189 - -
Viun3g04431 719 SUPERFAMILY TPR-like 564 701 IPR011990 GO:0005515
Viun3g04431 719 SUPERFAMILY TPR-like 262 415 IPR011990 GO:0005515
Viun3g04431 719 Coils Coil 615 635 - -
Viun3g04431 719 Gene3D Tetratricopeptide repeat domain 593 698 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04431 Viun-Chr3 52080799 52084025 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04431 - - gmx:100813461 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04431 3 52080799 52084025 Viun9g01201 9 11187340 11190641 ECH
Viun3g04431 3 52080799 52084025 Viun3g04431 3 52080799 52084025 ECH
Viun3g04431 3 52080799 52084025 Viun9g01201 9 11187340 11190641 PCT