Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01146 ATGGAATACCCTCCATCATATAGCTTCGCTTCCTCTTCTCACTCCTCCCACCATCAACCACCCTCAACATCCCTCTCTTCACAGCGCAGCCTTATCTCAGTTCCATCTCTCAACCCTTCCACCACCACCGCCGCCGCCGCCACCTTCCACCAGTGCCTCACCACCCTCAAGGGCCACACCTCCCACATCTCCTCCCTAACCCTCTCCGGCAAATTCCTTTACACGGGCTCCTCCGACAGGGAAATCAGGTCCTGGAACCGCACCCCTCTCAGCTCCCACCCTCAAAACACCATTCTCGCCGGAAACGGCGCCGTTAAGTCCTTGATTATTCAATCCAACAAACTCTTCAGCGCCCACCAAGACCACAAAATCCGCGTCTGGAAAATCAGCGACACCAAACACGAACATGACGTTGACGAGCATAAAAAATACACGCACGTGGCCACACTCCCCACTCTCGGAGACCGCGCCTCGAAGGTTCTGATCCCGAAGAACCATGTCCAAATCCGAAGGCACAAGAAGTGCACGTGGGTTCATCACGTGGACACCGTGTCCGCGCTCGCCCTGTCGAAAGACGGGACCTTGCTGTACTCCGTTTCGTGGGACAGGAGCATAAAAATGTGGAGAACGAAGGACTTCGCGTGTGTGGAGTCTGTGACGAACGCACACGACGACGCCATAAACGCGGTGGCGGTTTCTTACGACGGGCGCGTGTACACGGGATCAGCAGACAAGAGAATCAAGGTGTGGAGGAAGGAGGAAGGGGAAAGAAAACACACGCTGGTGGAGTGTTTGGAGAAGCACAATTCCGGGGTGAATGCTTTGGCTCTGAGCAGTGACGAGAGGCATTTGTATTCGGGTGCATGCGATAGATCGGTGTTGGTTTGGGAGAAAAAGGGAGAGAGAATGGGGTTGGTGGGTGCGTTGAGGGGCCATACAAAATCCATTTTGTGTTTGGCTGTTGCGGGTGATTTGGTGTGCAGTGGCTCTGCTGATAAAACGATAAGAATTTGGCGAGGCTTTCATGCACAGTATTCTTGTTTAGCTGTTTTGGAAGGACACGGTGGTTCGATCAAGTGTTTAACTGCCGTGCTTGACCACTGTAACCCGTCGCACTCCCAGACATCTTTTCTTGTCTACAGTGGCGGTTTGGACTGCGACATTAAGGTTTGGCAGATTTTGGTTCCTTCTATCTGA 1197 0.5313 MEYPPSYSFASSSHSSHHQPPSTSLSSQRSLISVPSLNPSTTTAAAATFHQCLTTLKGHTSHISSLTLSGKFLYTGSSDREIRSWNRTPLSSHPQNTILAGNGAVKSLIIQSNKLFSAHQDHKIRVWKISDTKHEHDVDEHKKYTHVATLPTLGDRASKVLIPKNHVQIRRHKKCTWVHHVDTVSALALSKDGTLLYSVSWDRSIKMWRTKDFACVESVTNAHDDAINAVAVSYDGRVYTGSADKRIKVWRKEEGERKHTLVECLEKHNSGVNALALSSDERHLYSGACDRSVLVWEKKGERMGLVGALRGHTKSILCLAVAGDLVCSGSADKTIRIWRGFHAQYSCLAVLEGHGGSIKCLTAVLDHCNPSHSQTSFLVYSGGLDCDIKVWQILVPSI 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01146 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Viun9g01146 398 Gene3D - 301 394 IPR015943 GO:0005515
Viun9g01146 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 250 - -
Viun9g01146 398 Gene3D - 11 155 IPR015943 GO:0005515
Viun9g01146 398 MobiDBLite consensus disorder prediction 1 32 - -
Viun9g01146 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 208 - -
Viun9g01146 398 SMART WD40_4 212 251 IPR001680 GO:0005515
Viun9g01146 398 SMART WD40_4 344 392 IPR001680 GO:0005515
Viun9g01146 398 SMART WD40_4 258 297 IPR001680 GO:0005515
Viun9g01146 398 SMART WD40_4 49 86 IPR001680 GO:0005515
Viun9g01146 398 SMART WD40_4 91 128 IPR001680 GO:0005515
Viun9g01146 398 SMART WD40_4 170 209 IPR001680 GO:0005515
Viun9g01146 398 SMART WD40_4 302 339 IPR001680 GO:0005515
Viun9g01146 398 Gene3D - 156 300 IPR015943 GO:0005515
Viun9g01146 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 297 - -
Viun9g01146 398 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 393 IPR045182 -
Viun9g01146 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 86 - -
Viun9g01146 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 338 IPR001680 GO:0005515
Viun9g01146 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 297 IPR001680 GO:0005515
Viun9g01146 398 SUPERFAMILY WD40 repeat-like 31 393 IPR036322 GO:0005515
Viun9g01146 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 338 - -
Viun9g01146 398 CDD WD40 52 392 - -
Viun9g01146 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 86 IPR001680 GO:0005515
Viun9g01146 398 Pfam WD domain, G-beta repeat 217 250 IPR001680 GO:0005515
Viun9g01146 398 Pfam WD domain, G-beta repeat 306 338 IPR001680 GO:0005515
Viun9g01146 398 Pfam WD domain, G-beta repeat 346 391 IPR001680 GO:0005515
Viun9g01146 398 Pfam WD domain, G-beta repeat 51 86 IPR001680 GO:0005515
Viun9g01146 398 Pfam WD domain, G-beta repeat 265 296 IPR001680 GO:0005515
Viun9g01146 398 Pfam WD domain, G-beta repeat 178 208 IPR001680 GO:0005515
Viun9g01146 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 260 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01146 Viun-Chr9 9782804 9784273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01146 222 339 Acyl Lipid Metabolism Gene Families AT3G18860 32.000 7.44e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01146 - - gmx:100777242 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04477 3 52503764 52505789 Viun9g01146 9 9782804 9784273 ECH
Viun9g01146 9 9782804 9784273 Viun9g01146 9 9782804 9784273 ECH
Viun3g04477 3 52503764 52505789 Viun9g01146 9 9782804 9784273 PCT