Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04477 ATGGAACGGACCGCATCCTTCAACGACACCAATAATACTCTCTCTTCGCAACCAAGTCTCGCTTCAGTTCCTTCCCTCAACTCACACTCACACCTCTTCAACGCTTCCACCACCTCTCACACGTGCCTCGCCACTCTCAAACCCCACGCCTCCTCCTACACCTCCTCCCTCGCCCTCGCCGGCAAGTTCCTCTACGCCGGCTCCTCCGACAGAGAAATCAGATCCTGGAACCACACCATTTTCCTCTCCGAACAACATCTACAAAACACCAACCTCATAACCGCGGGAACAGGTGCCGTGAAATCCATAGTGGTCCACTCCGACAAGCTCTTTACCGCACACCAAGACCACAAAATCCGCGTCTGGAGAATCACAACCCAAGACCACGACCAACAGAAATTCACACGTGTGGCCACTCTCCCCACGCTCGGTGACCGCGTGACCAAAATCTTGATCCCGAAGAATCACGTTCAGATTCGGCGGCACAAGAAGTGCACCTGGGTTCACCACGTGGACACCGTCTCCTCCCTCGCCTTGTCGCACGACGGAACGTTGTTGTACTCCGTTTCTTGGGACCGCACGTTGAAGATTTGGCGGACGAAAGACTTCGCGTGCTTGGAGTCCGTGCGCAACGCGCACGACGACGCCATAAACGCTGTGGCAGTTTCTGGCGATGGACACGTGTATACCGGATCCACCGACAAGAGAATCAGGGTTTGGAGAAAAAGGGAAGGGGAGAAGAAACACTCGGTGGTGGAGACGTTGGAGAAACACAGGTCAGGGATTAACGCCTTGGCTCTTAGCAGTGACGGTTGCGTGCTGTACTCTGGTGCATGTGATAGGTCCATACTGGTTTGGGAGAAGGGAGAGAATTGGAAATTGGTGGTGGTTGGTGCTTTGAGGGGGCACACTAAGTCCATTCTGTGCTTGGGTGTGGTTCGGGATTTGGTGTGTAGTGGTTCTGAGGATAAAACGGTGCGTATTTGGAGAGGGATTGAGAGGGAGTATTCATGTTTAGCTGTTTTGGAAGGGCATAGGAGCCCTATTAAGAGCCTAACTGCAACCCTTGATCACAGTGATCACCCTTCCCAGCTATCTCTTCTTGTCTATAGTGGCAGTTTGGACTCTGATGTCAAAGTTTGGCAGCAGGACTTTGATCATGGAGATATTTAG 1173 0.526 MERTASFNDTNNTLSSQPSLASVPSLNSHSHLFNASTTSHTCLATLKPHASSYTSSLALAGKFLYAGSSDREIRSWNHTIFLSEQHLQNTNLITAGTGAVKSIVVHSDKLFTAHQDHKIRVWRITTQDHDQQKFTRVATLPTLGDRVTKILIPKNHVQIRRHKKCTWVHHVDTVSSLALSHDGTLLYSVSWDRTLKIWRTKDFACLESVRNAHDDAINAVAVSGDGHVYTGSTDKRIRVWRKREGEKKHSVVETLEKHRSGINALALSSDGCVLYSGACDRSILVWEKGENWKLVVVGALRGHTKSILCLGVVRDLVCSGSEDKTVRIWRGIEREYSCLAVLEGHRSPIKSLTATLDHSDHPSQLSLLVYSGSLDSDVKVWQQDFDHGDI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04477 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 250 IPR001680 GO:0005515
Viun3g04477 390 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g04477 390 Gene3D - 8 148 IPR015943 GO:0005515
Viun3g04477 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 167 198 - -
Viun3g04477 390 Pfam WD domain, G-beta repeat 337 381 IPR001680 GO:0005515
Viun3g04477 390 Pfam WD domain, G-beta repeat 206 240 IPR001680 GO:0005515
Viun3g04477 390 Pfam WD domain, G-beta repeat 253 286 IPR001680 GO:0005515
Viun3g04477 390 Pfam WD domain, G-beta repeat 298 329 IPR001680 GO:0005515
Viun3g04477 390 Pfam WD domain, G-beta repeat 168 198 IPR001680 GO:0005515
Viun3g04477 390 CDD WD40 42 382 - -
Viun3g04477 390 Gene3D - 149 385 IPR015943 GO:0005515
Viun3g04477 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 167 208 IPR001680 GO:0005515
Viun3g04477 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 287 - -
Viun3g04477 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 210 240 - -
Viun3g04477 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 329 IPR001680 GO:0005515
Viun3g04477 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 287 IPR001680 GO:0005515
Viun3g04477 390 SMART WD40_4 39 77 IPR001680 GO:0005515
Viun3g04477 390 SMART WD40_4 160 199 IPR001680 GO:0005515
Viun3g04477 390 SMART WD40_4 86 123 IPR001680 GO:0005515
Viun3g04477 390 SMART WD40_4 293 330 IPR001680 GO:0005515
Viun3g04477 390 SMART WD40_4 202 241 IPR001680 GO:0005515
Viun3g04477 390 SMART WD40_4 248 287 IPR001680 GO:0005515
Viun3g04477 390 SMART WD40_4 335 382 IPR001680 GO:0005515
Viun3g04477 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 300 329 - -
Viun3g04477 390 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 382 IPR045182 -
Viun3g04477 390 SUPERFAMILY WD40 repeat-like 40 382 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04477 Viun-Chr3 52503764 52505789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04477 212 382 Acyl Lipid Metabolism Gene Families AT3G18860 28.492 2.30e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04477 - - gmx:100801906 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04477 3 52503764 52505789 Viun9g01146 9 9782804 9784273 ECH
Viun3g04477 3 52503764 52505789 Viun3g04477 3 52503764 52505789 ECH
Viun3g04477 3 52503764 52505789 Viun9g01146 9 9782804 9784273 PCT