Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun9g00890 | ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGTCAGCACATAAATTTCAAGAAGAGAGATTCATGCCAAAGTTGTGGATACCCTAAATTTGGAGGTCCTGACCCAGCAACTTACAGATACAACTGGACTGAAACCTTGGCAGGGGACTGGTATTGCACTTCTATCAACTGTGGAGCTCACAACTATGCCAGCAGATCAAGCTGCTACAGATGTGGTGCATTCAAATTTGGGGGAAACATGGATCCCTGTGGAGGATATGCTTCTGATTCTCCTCCTGGTTGGAAAACTGGTGACTGGATTTGCAGTAGAATTGGGTGTGGAGTCCATAACTATGCCAGCAGAACAGAGTGTTTCAAGTGCAAAACACCCAGAAATTTTGGTGACGCCGACTGA | 399 | 0.4637 | MSWSGGDWMCGACQHINFKKRDSCQSCGYPKFGGPDPATYRYNWTETLAGDWYCTSINCGAHNYASRSSCYRCGAFKFGGNMDPCGGYASDSPPGWKTGDWICSRIGCGVHNYASRTECFKCKTPRNFGDAD | 132 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun9g00890 | 132 | SUPERFAMILY | Ran binding protein zinc finger-like | 49 | 80 | IPR036443 | - | |
| Viun9g00890 | 132 | ProSitePatterns | Zinc finger RanBP2-type signature. | 101 | 122 | IPR001876 | - | |
| Viun9g00890 | 132 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 97 | 128 | IPR001876 | - | |
| Viun9g00890 | 132 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 48 | 79 | IPR001876 | - | |
| Viun9g00890 | 132 | Gene3D | - | 44 | 79 | - | - | |
| Viun9g00890 | 132 | Gene3D | - | 90 | 128 | - | - | |
| Viun9g00890 | 132 | Gene3D | - | 1 | 35 | - | - | |
| Viun9g00890 | 132 | ProSitePatterns | Zinc finger RanBP2-type signature. | 8 | 27 | IPR001876 | - | |
| Viun9g00890 | 132 | Pfam | Zn-finger in Ran binding protein and others | 97 | 126 | IPR001876 | - | |
| Viun9g00890 | 132 | Pfam | Zn-finger in Ran binding protein and others | 49 | 77 | IPR001876 | - | |
| Viun9g00890 | 132 | ProSitePatterns | Zinc finger RanBP2-type signature. | 52 | 73 | IPR001876 | - | |
| Viun9g00890 | 132 | SMART | zf_4 | 6 | 30 | IPR001876 | - | |
| Viun9g00890 | 132 | SMART | zf_4 | 99 | 125 | IPR001876 | - | |
| Viun9g00890 | 132 | SMART | zf_4 | 50 | 76 | IPR001876 | - | |
| Viun9g00890 | 132 | SUPERFAMILY | Ran binding protein zinc finger-like | 90 | 128 | IPR036443 | - | |
| Viun9g00890 | 132 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 4 | 33 | IPR001876 | - | |
| Viun9g00890 | 132 | SUPERFAMILY | Ran binding protein zinc finger-like | 3 | 34 | IPR036443 | - | |
| Viun9g00890 | 132 | PANTHER | ZINC FINGER PROTEIN | 49 | 129 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun9g00890 | Viun-Chr9 | 6792102 | 6793878 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun9g00890 | - | - | vun:114164438 | 312.768 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Viun3g04825 | 3 | 55526132 | 55527901 | Viun9g00890 | 9 | 6792102 | 6793878 | PCT | |
| Viun9g00890 | 9 | 6792102 | 6793878 | Viun3g04826 | 3 | 55526136 | 55527897 | PCT |