Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00803 ATGTCGAACCTCCTTCTTCTACCCTCTCTTCCCCTCACCACCTCCCCAAACCGCTTTCACACTTTTTCTTCCGCTTCTCCTCTTCAATTCCAATGCCGATTCTCCCTTTCTCTCCTCTCACCTCCTCACCACTCTCTCTCTCCCTTTCGCTCCCGCGCGCGCACAAGACAACCTTCCCTTCGCGTTTTCGATTCCTCTTCCGACGCCACAACCAACGAAGAATTGAAAGATGTGGCAAAGGAAGAGGGCGTTGAAGATCAGAGTGTTGGGATTGCGGACCAGGAATATCCAAGTGGCGAGTTCGATTTCAAACCGGTTACCGGATGGAGAAGCTTCCTCGTTAAGCTTAAGATGCTGGTTGCGTTCCCATGGGAGCGTGTGCGCAAGGGAAGCGTTCTCACAATGAAGCTTCGTGGCCAGATATCTGATCAAGTGAAGAGTAGGTTCTCTCCTGGACTTTCTTTGCCTCAAATTTGTGAGAACTTTTTGAAAGCAGCATATGATCCTCGTATTTCTGGGATCTACCTTCATATTGATAGTTTAAATTGCGGGTGGGGTAAAGTAGAAGAAATTCGAAGGCATATATTGGATTTCAAAAAATCAGGAAAATTTATTCTGGCTTATGTGCCTTTATGTCAAGAAAAGGAGTATTACCTTGCATGTGCATGTGACGAGATATACTCCCCACCCAGTGCTTACTTTTCTTTGTTTGGATTGACTGTTCAAGCCTCATTCCTCAGAGGTATTTTAGATAACATAGGAATTGAACCGCAAGTGGAAAGGATTGGAAAATACAAAAGTGCAGGTGATCAACTAGCTCGAAGAACCATGTCTGAGGAAAATTGTGAGATGCTGACTGCATTGCTTGATAATATCTATACAAATTGGCTGGATAAAGTTTCTTCTGCCAAAGGAAAAAGTAGAGAAGATATTGAGAAATTGATAAATGAAGGTGTCTATCGAGTTGACAAGCTGAAAGAAGAGGGACTCATATCAAATATAATCTATGATGACGAGATTATCACCATGTTGAAGGAGAGACTTGGAGTGAAACTTGATAAAGATCTGCCAATGGTGGATTACAGGAAATACGCTCGAGTTAGGAAATGGACTGTTGGAATATCAGGCGGTAGAGAACTTATAGCCATTATCCGAGCATCAGGGAGCATTAGTCGTGTAGAGAGTCAATTAAGTGTCTCTAGCTCAGGCATCACTGCAGAGAAATTCATTGAAAAGATTCGAACTGTCAGAGAGTCAAAAAAATTTAAGGCTGCTATCATTAGAATCGACAGCCCTGGAGGTGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCCGGCTTTTGGCTGCTAAAAAACCAGTCATTGCTTCCATGTCTGATGTGGCAGCAAGCGGAGGGTACTACATGGCAATGGGAGCTGATGCTATTGTTGCAGAAAACCTTACCTTAACTGGTTCGATTGGAGTGGTCACAGGAAAATTTAACCTGGGGAAACTGTATGAGAAGATTGGCTTTAACAAAGAAATTATATCAAGGGGAAAATATGCTGAGCTCCTTGCTGCTGAACAACGTCCTTTCAGGCCAGATGAAGCAGAATTATTTGCCGAATCTGCTAGGCATGCTTATAAACAATTCCGGGACAAGGCTGCATTGTCCAGATCAATGACAGTAGAGAAGATGGAGGAGGTTGCACAGGGAAGGGTTTGGACTGGTAACGATGCAGCATCGCGTGGTTTAGTTGATGCTATTGGCGGGCTTTCTCGTGCTATTGCCATAGCAAAAGTTAAGGCCAATATACCTCAAGACAGTGAGGTTACACTTGTGGAGATCTCCAGACCCAGCCCTTCTCTACCCGAGATCTTGTTAGGTGTTGGGAGTTCCCTCGTTGGAGCTGACAGAATGGTGAAGGAACTGCTACAGGGTGTGACATTTTCTGATGGAGTTCAAGCCCGGATGGATGGAATCATGTTTCAGACATTGGAAGAATATCCTTTTGGGAATCCCATTTTGTCAATAATAAAATCTTACCTCAGTTCCTTGTAG 2046 0.4389 MSNLLLLPSLPLTTSPNRFHTFSSASPLQFQCRFSLSLLSPPHHSLSPFRSRARTRQPSLRVFDSSSDATTNEELKDVAKEEGVEDQSVGIADQEYPSGEFDFKPVTGWRSFLVKLKMLVAFPWERVRKGSVLTMKLRGQISDQVKSRFSPGLSLPQICENFLKAAYDPRISGIYLHIDSLNCGWGKVEEIRRHILDFKKSGKFILAYVPLCQEKEYYLACACDEIYSPPSAYFSLFGLTVQASFLRGILDNIGIEPQVERIGKYKSAGDQLARRTMSEENCEMLTALLDNIYTNWLDKVSSAKGKSREDIEKLINEGVYRVDKLKEEGLISNIIYDDEIITMLKERLGVKLDKDLPMVDYRKYARVRKWTVGISGGRELIAIIRASGSISRVESQLSVSSSGITAEKFIEKIRTVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAAKKPVIASMSDVAASGGYYMAMGADAIVAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAELLAAEQRPFRPDEAELFAESARHAYKQFRDKAALSRSMTVEKMEEVAQGRVWTGNDAASRGLVDAIGGLSRAIAIAKVKANIPQDSEVTLVEISRPSPSLPEILLGVGSSLVGADRMVKELLQGVTFSDGVQARMDGIMFQTLEEYPFGNPILSIIKSYLSSL 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00803 681 SUPERFAMILY ClpP/crotonase 122 339 IPR029045 -
Viun9g00803 681 Gene3D - 273 366 - -
Viun9g00803 681 Gene3D - 130 272 - -
Viun9g00803 681 Gene3D - 377 525 - -
Viun9g00803 681 Pfam Peptidase family S49 198 350 IPR002142 GO:0006508|GO:0008233
Viun9g00803 681 Pfam Peptidase family S49 449 599 IPR002142 GO:0006508|GO:0008233
Viun9g00803 681 NCBIfam signal peptide peptidase SppA 381 595 IPR004635 GO:0006508|GO:0008233
Viun9g00803 681 Gene3D - 526 642 - -
Viun9g00803 681 CDD S49_Sppa_N_C 381 595 IPR047272 -
Viun9g00803 681 SUPERFAMILY ClpP/crotonase 381 586 IPR029045 -
Viun9g00803 681 CDD S49_SppA_67K_type 133 346 IPR047217 -
Viun9g00803 681 PIRSF Protease_4_SppA 66 680 IPR004634 GO:0006465|GO:0008233|GO:0016020
Viun9g00803 681 PANTHER PROTEASE 4 82 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00803 Viun-Chr9 6004665 6017381 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00803 K04773 - gmx:100781522 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04703 3 54387503 54396507 Viun9g00803 9 6004665 6017381 PCT