Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04703 ATGTCACGGGCTCGTATTGCCGTCCACCGCTTCCGCTGTACCTACGCCGCATTATCGTCAATCAACTCATCTTCATCTTCAGTTACACACTTTCAGTTCCAATGTCCACTACAACATCTCACGCGCGCATCCCTCCCCTTCCACTTCCACTCTCCTTATTCTTCGTCTGTCCCCAAACAAGCCTTAAACGATGGCGTCGAGAATTATCCGAGTGGAGACTTTGATTTCAAGCCCCTCACTGGCTGGAAAAAATTCCTCGTCAAGCTCAAGATGCTAACGGCCTTACCCTGGCACCGGCTCCGATACGGCACCGTTTTGACAATCAAGTTGCGCGGCCAGGTATCGGATCAGCTGAAGAGTAGGTTCTCTCGGGGATTATCTCTGCCTCAAATCTGTGATAATTTCATCAAGGCAGCTTATGATCCTCGAATTTCCGGTATCTATCTCCACATTGATATTTTAAATTGTGGCTGGGCAAAGGTTGAAGAAATTCGAAGGCACATTTTCAATTTCAGAAAATCAGGAAAATTTATTGTGGCTTATGTCCCTTCCTGTCGAGAAAAAGAATATTATATTGCAAGTGCGTGTGAAGAAATATATGCCCCTCCAAGTGCTTATTTTTCATTGTTCGGATTTACTGTTCAGGCTCCATTCTTCAGAGGTGTTTTAGAGAATCTTGGAATTGAACCAGAAGTAGAAAGGATTGGCAAGTACAAAAGTGTAGGAGATCAACTTACCCGTAGAACCATGTCTGAAGATCATCATGAGATGCTCACTTCATTGCTTGATAATATCTATACACATTGGCTGGACAAAGTCTCTGCTGCTAGAGGAAAGAAAATAGAAGATATTGAAAACTTCATAAATAAAGGTGTTTATCAAGTAGAGACACTTAAAGAGGAGGGCTTCATATCAGACATAATCTATGAGGATGAGGTTATTACAAGGTTGAAGGACAGACTTCAAGTAAAAACAAATAAAAATCTGCCTATGGTTGATTACAGAAAATACTCCGGAGTTAGGAAATCAACTCTTGGACTATCAGATGGTAAAGACTTAATAGCCATCATCCGAGCTTCTGGGAGTATTCGTCGTATTGAGAGTCCACTAGGTGCCCGTAGCTCAGGTATCATTGGAGAGAAGTTAATTGAGAAGATACGCAGTGTAAGAGAATCAAATAAATACAAGGCTGCTATTATCCGAATTGACAGTCCAGGAGGGGATGCCCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTGGCAGAAAGTCTTACCTTAACTGGTTCGATTGGAGTGGTCACAGGAAAGCTTAACCTTGGGAAACTCTATGAGAAGATTGGCTTCAACAAAGAAATCATATCAAGGGGTAGATATGCTGAGCTGCGGGCAGCTGAACAGCGTTCATTTAGACCAGATGAAGCAGAGCTATTTTCCAAGTCTGTTCAGCATGCTTATAAACAATTTCGAGATAAAGCAGCCCTTTCTCGATCTATGACTGTAGAGAAGATGGAAGAGGTTGCACAGGGGAGGGTTTGGACCGGCAAGGATGCAGCTTCTAATGGTTTGATTGATGCTATTGGCGGCCTTTCTCGAGCTGTTGCCATAGCAAAATTGAAGGCCGGTATACCTCAAGATAGACAGGTTACTGTTGTGGAGGTCACAAGACCCAGCCCTTCTCTTCCCGAGATTTTGAGTAGTCTAGGTAATTCTGTGGTTGGAGTAGACAGAACTTTAAATGAATTACTACAGGACTTGACATTTTCCCACGGAGTCCAAGCACGGATGGACGGAATCGTGTTTGAGAAATTGGAAGGATATCCATACGCCAACCCCATTTTAGCATTGATAAAAGATTATCTTAGTTCCCTTTAG 1965 0.4321 MSRARIAVHRFRCTYAALSSINSSSSSVTHFQFQCPLQHLTRASLPFHFHSPYSSSVPKQALNDGVENYPSGDFDFKPLTGWKKFLVKLKMLTALPWHRLRYGTVLTIKLRGQVSDQLKSRFSRGLSLPQICDNFIKAAYDPRISGIYLHIDILNCGWAKVEEIRRHIFNFRKSGKFIVAYVPSCREKEYYIASACEEIYAPPSAYFSLFGFTVQAPFFRGVLENLGIEPEVERIGKYKSVGDQLTRRTMSEDHHEMLTSLLDNIYTHWLDKVSAARGKKIEDIENFINKGVYQVETLKEEGFISDIIYEDEVITRLKDRLQVKTNKNLPMVDYRKYSGVRKSTLGLSDGKDLIAIIRASGSIRRIESPLGARSSGIIGEKLIEKIRSVRESNKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGVIVAESLTLTGSIGVVTGKLNLGKLYEKIGFNKEIISRGRYAELRAAEQRSFRPDEAELFSKSVQHAYKQFRDKAALSRSMTVEKMEEVAQGRVWTGKDAASNGLIDAIGGLSRAVAIAKLKAGIPQDRQVTVVEVTRPSPSLPEILSSLGNSVVGVDRTLNELLQDLTFSHGVQARMDGIVFEKLEGYPYANPILALIKDYLSSL 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04703 654 PIRSF Protease_4_SppA 32 654 IPR004634 GO:0006465|GO:0008233|GO:0016020
Viun3g04703 654 Gene3D - 348 499 - -
Viun3g04703 654 CDD S49_SppA_67K_type 106 319 IPR047217 -
Viun3g04703 654 SUPERFAMILY ClpP/crotonase 93 310 IPR029045 -
Viun3g04703 654 PANTHER PROTEASE 4 67 653 - -
Viun3g04703 654 SUPERFAMILY ClpP/crotonase 354 559 IPR029045 -
Viun3g04703 654 Pfam Peptidase family S49 171 323 IPR002142 GO:0006508|GO:0008233
Viun3g04703 654 Pfam Peptidase family S49 422 572 IPR002142 GO:0006508|GO:0008233
Viun3g04703 654 Gene3D - 101 213 - -
Viun3g04703 654 Gene3D - 504 621 - -
Viun3g04703 654 CDD S49_Sppa_N_C 354 568 IPR047272 -
Viun3g04703 654 NCBIfam signal peptide peptidase SppA 355 568 IPR004635 GO:0006508|GO:0008233
Viun3g04703 654 Gene3D - 214 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04703 Viun-Chr3 54387503 54396507 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04703 K04773 - gmx:100809623 1087.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04703 3 54387503 54396507 Viun3g04703 3 54387503 54396507 ECH
Viun3g04703 3 54387503 54396507 Viun9g00803 9 6004665 6017381 PCT