Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00595 ATGGTTTCAATGTCTCTGTGTCTTTCTTCTTCCTTTCTTCCTTCTCCCATTCCCCATACCAAATTTCCCACAACCCAAGATCCGATTTTTCGGGTCACCCGCTTCTCAGTTTCTGCTCCGTCAAAAACCAGTGTCTCTGCCGCTTCTACCCGAAAACCAGCTCCAGCAACCAAAACCAGAAACCCGAAAGATAAGGAATTTTCCCAAACACTGTTCTTTGAAGGTATGGGGGAGACACCCATCAAGAAGAAGAAGAAGAAAAAGAAGGAGAAAAGGAAGAGTGATAAAGTGTGGGTTCACACTCTCCCTGAAGTCTTAAACTATCACATTCATAAGAAGGATTGGGCTATTAGCCTTGAGTTATTTGGCATGCTTAGAGGCCAACCCTATTACCAACCCAGAGAAGATACTTACATGAGACTCATTGTGTTGCTTGGAAAATCTGGCCAACCCCATCGTGCCAATGACCTTTTTAAGTCTATACATGAAGATGGCTGTGAAAGTACTGAACTTTACACGGCCTTAATTGCAGCCTATTGTCGAAATAATCTTGTTGATGAGGCATTGTCGATTCTTGATGAGATGATGAACATCCCCAGTTGCCAGCCTGATATCATAACTTACAGTACCTTGATGGAAGCTCTTGTGGATGCTTTGAAGTTTGAAATGGTTGAATTGGTGTATGATAAAATGGTTGAAAGGTCTGTCATGCCAAACACTCTCACCCAGAACCTCCTCCTGAGTTGTTATGGTAAGGCTGGAAAGTTTGATCAGATGGAGAAGATGGTGTCAAGTATGATGGAGAGCACTGCCTGCAAGCCTGATGTTTGGACAATGAACGCCGTCATCGGCGTCTTTCGTGATGAGGGTGAGATTGATATGATGGAGAAATGGTATGAGAAGTTTTGTAGTTTTGGGATACAACCACAAAGAAGCACTTTCAATATTTTAATGGGAGCTTATAGTAAAAAAAGAATGTATGAGAAAATGTCATCGGTTATGCAGTGTATGCGCAAGGAAAAATGTCCATGGACAACCTCAACTTACAACTTTGTGATTGAGGCGTTTGCAGATGTAGGTGATGCTGCAAACATGGAACGTGCATTTGATCAAATGGTTGGTGAGGGTTTGAAAGCAGATACCAAGACTTTGTGCTGCCTTATCAATGGCTATTCTAAGGCAGGAATCTTCTATAAAGTAATGAGCAGTGTTGTTTTGGCTGAGAAGCTTCAGATACATATGAATACTTCATTTTACAATGCAGTCATATCTGCCTGTGCCAAGGAGGATTCTTTGATTGAAATGGAAAGATTTTTCAAGCGTATGAAAGATAAAGAGTGTCAACCAGATGACACTACATACTCTGTCATGATTGAAGCTTACAGAAAAGCAAATATGAATGATAAAATATTCTATTTGGAGCAAGAAAAACAGATGATGATATCTGATGAGAAAAAGTTGAATGAGCTTCAGGAGACAATCTTTGATTCATATGCCGTTTAA 1503 0.4059 MVSMSLCLSSSFLPSPIPHTKFPTTQDPIFRVTRFSVSAPSKTSVSAASTRKPAPATKTRNPKDKEFSQTLFFEGMGETPIKKKKKKKKEKRKSDKVWVHTLPEVLNYHIHKKDWAISLELFGMLRGQPYYQPREDTYMRLIVLLGKSGQPHRANDLFKSIHEDGCESTELYTALIAAYCRNNLVDEALSILDEMMNIPSCQPDIITYSTLMEALVDALKFEMVELVYDKMVERSVMPNTLTQNLLLSCYGKAGKFDQMEKMVSSMMESTACKPDVWTMNAVIGVFRDEGEIDMMEKWYEKFCSFGIQPQRSTFNILMGAYSKKRMYEKMSSVMQCMRKEKCPWTTSTYNFVIEAFADVGDAANMERAFDQMVGEGLKADTKTLCCLINGYSKAGIFYKVMSSVVLAEKLQIHMNTSFYNAVISACAKEDSLIEMERFFKRMKDKECQPDDTTYSVMIEAYRKANMNDKIFYLEQEKQMMISDEKKLNELQETIFDSYAV 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00595 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Viun9g00595 500 Pfam PPR repeat 137 166 IPR002885 -
Viun9g00595 500 MobiDBLite consensus disorder prediction 42 64 - -
Viun9g00595 500 Gene3D Tetratricopeptide repeat domain 371 496 IPR011990 GO:0005515
Viun9g00595 500 Pfam PPR repeat family 415 461 IPR002885 -
Viun9g00595 500 Pfam PPR repeat family 171 216 IPR002885 -
Viun9g00595 500 MobiDBLite consensus disorder prediction 42 56 - -
Viun9g00595 500 NCBIfam pentatricopeptide repeat 171 197 IPR002885 -
Viun9g00595 500 NCBIfam pentatricopeptide repeat 419 450 IPR002885 -
Viun9g00595 500 NCBIfam pentatricopeptide repeat 313 345 IPR002885 -
Viun9g00595 500 NCBIfam pentatricopeptide repeat 242 276 IPR002885 -
Viun9g00595 500 NCBIfam pentatricopeptide repeat 206 240 IPR002885 -
Viun9g00595 500 Gene3D Tetratricopeptide repeat domain 99 268 IPR011990 GO:0005515
Viun9g00595 500 Gene3D Tetratricopeptide repeat domain 269 370 IPR011990 GO:0005515
Viun9g00595 500 Coils Coil 473 493 - -
Viun9g00595 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 203 IPR002885 -
Viun9g00595 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Viun9g00595 500 PANTHER EXPRESSED PROTEIN 29 482 IPR044179 GO:0003729
Viun9g00595 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 274 IPR002885 -
Viun9g00595 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Viun9g00595 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Viun9g00595 500 Pfam Pentatricopeptide repeat domain 227 286 IPR002885 -
Viun9g00595 500 Pfam Pentatricopeptide repeat domain 306 357 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00595 Viun-Chr9 4377880 4380498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00595 208 483 Miscellaneous Gene Families AT4G11690 18.692 6.05e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00595 - - gmx:100776657 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00595 9 4377880 4380498 Viun9g00595 9 4377880 4380498 ECH
Viun3g05578 3 61520888 61523653 Viun9g00595 9 4377880 4380498 PCT