Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05578 ATGGCTTCTCTTTCTCTCTCCTTTTCTTCTTCCATTGTTCCCTCTTCAATTCCCCACCACAAATCCACCAAAATTCACACTCAAGACTCCACTTTTAGGGTTACCTGCTTCGCCATTTCCTCTCCCCCTTCCAAACCCGTTGTCAAAAAGCGACACTGGAAAAAAGGGGAGTTTCCTGGTACTTCCGAAACATCGTTAGACGATAGTACGAGGAGGAGCCCCATCAAGAACATCAAGAAGAAGTTGGAGAAAAAGAACAGTGCGAAGGCATGGGTCAACACTGTCACCGAAGCCTTATCTGAACAAATCGACAAGAAGCAGTGGCTTCAAGCCCTTCAGGTATTTGATATGCTTAGGGAACAAACTTTCTACAAACCTAAAGAAGGGGCGTATATGAAACTCATTGTGCTGCTTGGAAAATCTGGTCAACCCCACCGTGCCCACCAACTTTTCACCACAATGATTGAAGAAGGTTTAGAACCTACTCCTTATCTGTACACAGCATTGCTTGCTGCGTATTGCAGGAGCAACCTCATTGATGAAGCTTTTTCGGTTCTTAATGAGATGAAGAGGCTTCCTCTTTGCCAGCCTGATGTTTTCACTTACAGTACCTTGATCAAAGTTTGTGTTGATGCTTTCAAATTTGATTTGGTTGAATTATTGTATGAAGAAATGGCTGAAAGGGCCATCACACCAAACACAGTGACACAGAACATCGTTTTGGGTGGTTATGGTAAGGCGGGGAAGTTTGATCAAATGGAAAAAGTGCTTTCCAGCATGCTGGAGAGCATTACCTGCAAGCCTGATGTTTGGACAATGAACACCATCATCAGTGTCTTTGGTAACATGGGTCAGATTGATATGATGGAGAAATGGTATGAAAAATTCCGTAATTTTGGGATAGAACCTGAAACGCGCACTTTTAACATTTTGATTGGTGCCTATGGGAAGAAAAAAATGTATGACAAAATGTCATCTGTCATGGAGTACATGCGCAAGTTGCAATTTCCATGGACAACCTCGACTTATAACAATGTGATTGAGGCATTTGCCGATGCTGGTGATGTGAGGCACATGGAGTGTACATTTGATCAAATGCGTGCTGAGGGTATGAAAGCAGATACCAAAACTTTCTGTTGCCTTATCAATGGTTATGCAAATGCAGGTTACTTTCATAAAGTAATTAGCAGTGTTCAATTGGCTGGAAAATTTGAGATACCTGAAAATATTGCCTTTTATAACGCAGTCTTATCTGCATGTGCAAAGGCAGATGATTTGATGGAAATGGAAAGAGTTTTTAAGCGTATGAAAGATAACCAATGTCAACCGGACGAAACAACATACATGATCATGATTGAAGCATATAGAAAAGACGGTATGAATGACAAAATATACTATTTGGAGCAGGAAAAGCAGACAATGATAACTGACAATAAAATAGTGAGCCATTATGAGGATGGGATCTTTAGTTCAGACAGCTAA 1482 0.4103 MASLSLSFSSSIVPSSIPHHKSTKIHTQDSTFRVTCFAISSPPSKPVVKKRHWKKGEFPGTSETSLDDSTRRSPIKNIKKKLEKKNSAKAWVNTVTEALSEQIDKKQWLQALQVFDMLREQTFYKPKEGAYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPYLYTALLAAYCRSNLIDEAFSVLNEMKRLPLCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERAITPNTVTQNIVLGGYGKAGKFDQMEKVLSSMLESITCKPDVWTMNTIISVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKKMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDVRHMECTFDQMRAEGMKADTKTFCCLINGYANAGYFHKVISSVQLAGKFEIPENIAFYNAVLSACAKADDLMEMERVFKRMKDNQCQPDETTYMIMIEAYRKDGMNDKIYYLEQEKQTMITDNKIVSHYEDGIFSSDS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05578 493 Gene3D Tetratricopeptide repeat domain 263 335 IPR011990 GO:0005515
Viun3g05578 493 Gene3D Tetratricopeptide repeat domain 398 474 IPR011990 GO:0005515
Viun3g05578 493 MobiDBLite consensus disorder prediction 47 72 - -
Viun3g05578 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Viun3g05578 493 Pfam PPR repeat 131 159 IPR002885 -
Viun3g05578 493 Pfam PPR repeat 238 262 IPR002885 -
Viun3g05578 493 PANTHER EXPRESSED PROTEIN 28 471 IPR044179 GO:0003729
Viun3g05578 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Viun3g05578 493 Pfam PPR repeat family 166 209 IPR002885 -
Viun3g05578 493 Pfam PPR repeat family 409 455 IPR002885 -
Viun3g05578 493 Pfam PPR repeat family 340 387 IPR002885 -
Viun3g05578 493 Pfam PPR repeat family 268 315 IPR002885 -
Viun3g05578 493 Gene3D Tetratricopeptide repeat domain 92 262 IPR011990 GO:0005515
Viun3g05578 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Viun3g05578 493 MobiDBLite consensus disorder prediction 1 24 - -
Viun3g05578 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Viun3g05578 493 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g05578 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Viun3g05578 493 NCBIfam pentatricopeptide repeat 272 303 IPR002885 -
Viun3g05578 493 NCBIfam pentatricopeptide repeat 235 270 IPR002885 -
Viun3g05578 493 NCBIfam pentatricopeptide repeat 200 234 IPR002885 -
Viun3g05578 493 NCBIfam pentatricopeptide repeat 164 192 IPR002885 -
Viun3g05578 493 NCBIfam pentatricopeptide repeat 307 335 IPR002885 -
Viun3g05578 493 NCBIfam pentatricopeptide repeat 342 374 IPR002885 -
Viun3g05578 493 NCBIfam pentatricopeptide repeat 413 445 IPR002885 -
Viun3g05578 493 NCBIfam pentatricopeptide repeat 131 162 IPR002885 -
Viun3g05578 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 263 IPR002885 -
Viun3g05578 493 Gene3D Tetratricopeptide repeat domain 336 397 IPR011990 GO:0005515
Viun3g05578 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Viun3g05578 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05578 Viun-Chr3 61520888 61523653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05578 116 486 Glycosyltransferase AT1G05670 24.011 1.56e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05578 - - gmx:100786610 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05578 3 61520888 61523653 Viun3g05578 3 61520888 61523653 ECH
Viun3g05578 3 61520888 61523653 Viun9g00595 9 4377880 4380498 PCT