Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00478 ATGGTTCAAACCAAAACCACAAACCCCTCTAAACCCGACGCCATCCACCCACTCACGCCGGCCCAAACCCGCGAACCTTCCTCCCTTTCCGCCTCTCCCCCTCCTCCCCGCCGCAGCCGCCGCCTCGCCTCTCTCTCCGACGTCTCCCCTGCCGGTAGGGTTTCCACCGCCTCCAACCGCCAGGCCTTTCTCAACTTAAGATCGGGAAAGAGGGTTCTCAAGAGCGATATGACAAACGACGCAGAGGAACAAGGTAATGACGCAAACAATGAAGATGATGACGTTGCAGTGGCGGTTGATGTCAATGTCACCACCAGAGAAACTACCTCAGCCGTCAATGTCAATGTTGTAGCAGATGATTCCGGTGTTAGGGTTTCCACCCGGAGCCGGAAGCGCAAGAGTGACTCAGCCGGTTCCGAACACGAGGAGTTTCTCTACTTAAGGTCGGGAAAGAAGACTTTAAGGAGAACAATCAATTTCGATCCCAAAGAACAAGTTAATAACGCAAATGACGATGATGCTGATAATAGTAATGTTGATGACGATGGTGACGTGGCAGTGGCGGTTGATGGTGACGTGACAACGCCGGAATCCAGAACGGAGAACTCCGGTGTGAATAATGCACCTGCGCGAGTTCGAGAACGTTCTAGAAACTCAAATGCAAGAGAGCGCCGTTCCGGTTTGAGGAGGAATGATCATATGGAGCGCTTCCACGACATTGCGCGGGAAAATGCGTCACGGTTTGCTTTCTTCGCACCGGAAGAGGAAGATGGTGACCGGTCGCCGCCGGTTCCCGAAGCGGCGCATGAGGAAATTGAGGACTGGCCTGGTCCTTTCTCTACGGCTATGAAAATCATCAGAGACCGAGGGATGAATCTTCAGAACGCTCAAACAAGTTCGCAGACGAACTTGTGTGAGTCTATTAAGTGGGTTCCCAAGGCGAAGAAGGGGGATGTGGGCGTTTTATCGGTTCCTTCGTTGCAAGACATGTGCTTTAAGATTCTTGTGAAGAATGTTGACGCGATTGCATCGCTCGAGAGTGTGCCTGATGCACTGAGACACCGGCTTAGCCAGTTGCTCTGTGACTCGAGGAGAATTAATGGTCACTTTCTAGAGCTTCTTGTGCGTGGAACTCCCACGGAGATTCGGTTAAGGGACTGCTCGTGGTTGACCGAGGAACAGTTTACCGAGTGTTTTCGAACGTGTAACACGGAGAATTTGTTGGTACTGCAACTTGACCAGTGTGGGAGATGTTTGCCTGATTTTGTAATAGTTGCTACTTTGGCACGGTCACCTAGGAATTTGGATAGGTTGACTACTCTATCACTCCGTGGTGCATGCCGACTTTCAGATGGAGGTTTGCGTGCGCTGGTTTCTTCAGCTCCTGCACTTAGATCGATAAATCTAAGCCAGTGCTCCCTTCTCACATCTGCTAGTATATATATTTTGGCTGAATCTTTAAGATATCTTCTGAAAGAGTTGTTCCTTGATGATTGCCATGGCATTGATGCTGCACTAATTGTGCCAGCACTGATTGAGCTTGAACATTTAGAAGTGTTGTCAGTAGCTGGTATTGAAACTGTTTGTGATGAATTTGTGAAGAATTACATTGTTGCACGTGGCCAAAACATGAAAGAGCTCGTTTTGAAGGACTGTATAAACTTGACCGATTCATCAATCAAAGTTATTGTTGAGCATTGTCCGGGATTGCGGGTACTTGATCTTATGAACCTGAACAGATTAACAGATTTATCCATTGGATATCTTACCAATAGTTGCCGCGTACTTCATACCCTGAAGCTTTGCCGAAATCCATTCAGTGATGAAGCAATTGCTGCATTTGTGGAAACCACCGGAGGGTCCCTGAAGGAACTGTCACTTAATAACATCAAGAAGGTTGGTTACCACACAACCTTATCACTTGCAAACCATGCTAAAAATTTGCACTCTCTAGATTTATCTTGGTGCAGAAATTTGACAGATAATGCATTGGGTTTGATTGTGGATAGCTGCTTGGCGCTGAGGTTACTCAAACTTTTTGGATGCACTCAGGTTACAGATGCATTTCTTAATGGTCACTCAAACCTACAGATACAGATAATTGGTTTAAAAATGTCTCCTGTTTTAGAACATGTCAAAGTTCCAGATCCTCATCAGGGTGCTTTGAATTATTCATCAGTCTCTTCGGATTTGGTATAA 2199 0.4702 MVQTKTTNPSKPDAIHPLTPAQTREPSSLSASPPPPRRSRRLASLSDVSPAGRVSTASNRQAFLNLRSGKRVLKSDMTNDAEEQGNDANNEDDDVAVAVDVNVTTRETTSAVNVNVVADDSGVRVSTRSRKRKSDSAGSEHEEFLYLRSGKKTLRRTINFDPKEQVNNANDDDADNSNVDDDGDVAVAVDGDVTTPESRTENSGVNNAPARVRERSRNSNARERRSGLRRNDHMERFHDIARENASRFAFFAPEEEDGDRSPPVPEAAHEEIEDWPGPFSTAMKIIRDRGMNLQNAQTSSQTNLCESIKWVPKAKKGDVGVLSVPSLQDMCFKILVKNVDAIASLESVPDALRHRLSQLLCDSRRINGHFLELLVRGTPTEIRLRDCSWLTEEQFTECFRTCNTENLLVLQLDQCGRCLPDFVIVATLARSPRNLDRLTTLSLRGACRLSDGGLRALVSSAPALRSINLSQCSLLTSASIYILAESLRYLLKELFLDDCHGIDAALIVPALIELEHLEVLSVAGIETVCDEFVKNYIVARGQNMKELVLKDCINLTDSSIKVIVEHCPGLRVLDLMNLNRLTDLSIGYLTNSCRVLHTLKLCRNPFSDEAIAAFVETTGGSLKELSLNNIKKVGYHTTLSLANHAKNLHSLDLSWCRNLTDNALGLIVDSCLALRLLKLFGCTQVTDAFLNGHSNLQIQIIGLKMSPVLEHVKVPDPHQGALNYSSVSSDLV 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00478 732 PANTHER UNCHARACTERIZED 344 695 - -
Viun9g00478 732 Gene3D Ribonuclease Inhibitor 371 490 IPR032675 -
Viun9g00478 732 MobiDBLite consensus disorder prediction 215 232 - -
Viun9g00478 732 MobiDBLite consensus disorder prediction 123 143 - -
Viun9g00478 732 MobiDBLite consensus disorder prediction 160 232 - -
Viun9g00478 732 MobiDBLite consensus disorder prediction 124 143 - -
Viun9g00478 732 SMART LRR_CC_2 541 566 IPR006553 -
Viun9g00478 732 SMART LRR_CC_2 435 460 IPR006553 -
Viun9g00478 732 SMART LRR_CC_2 671 696 IPR006553 -
Viun9g00478 732 SMART LRR_CC_2 567 592 IPR006553 -
Viun9g00478 732 SMART LRR_CC_2 593 617 IPR006553 -
Viun9g00478 732 SMART LRR_CC_2 461 486 IPR006553 -
Viun9g00478 732 SMART LRR_CC_2 645 670 IPR006553 -
Viun9g00478 732 Gene3D Ribonuclease Inhibitor 491 728 IPR032675 -
Viun9g00478 732 MobiDBLite consensus disorder prediction 195 214 - -
Viun9g00478 732 MobiDBLite consensus disorder prediction 1 62 - -
Viun9g00478 732 FunFam F-box/LRR protein 540 717 - -
Viun9g00478 732 FunFam RNI-like superfamily protein 319 535 - -
Viun9g00478 732 SUPERFAMILY RNI-like 383 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00478 Viun-Chr9 3392488 3397737 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00478 K15082 - gmx:100808150 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00478 9 3392488 3397737 Viun9g00478 9 3392488 3397737 ECH
Viun3g05443 3 60396408 60400804 Viun9g00478 9 3392488 3397737 PCT