Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05443 ATGCTACCATTCAACCAAACTACCCTAACTCCTAAACCCCTCAATCCCACTCCCTCACCCAACCACCACCACCAACCACCGTCACCACCACCACCTTCCTCTTCTTCTTCCACTGCTCAAACCATGACCAACACCAATCCAATTCTAGACTCTAATCCTCCAAACCTCGAAGGGGATTCCGATTCTGATATTGACGCTCTCATCAATGCTTTCTTCGAACCTAATCCCCAATTCCCCTCTCTCGATCACCTCCAAGGATCCACCTCCGACGCCAAGGAATCATCTCTCAAGAGAGGATTAGACACCGGGGATGATTCTTCCCAGGCACCAATTCCCCTCAAACGCGGTCGTATTGACAATGTCTTCTTCCACCGCGCCGATCTCCATGCCGTCATTCAAATTCAAAACCCTATTCCTTCTCCTCTTCCTCTCTCCCAGTCCCTGTCGCATGCCGCTGCTACCAATGGAGACACTCAAGCTGTGGAAGGGCAGGGGAAGCGTCCGGTTTTTGACTCCGATTTCCTGTCCAGGGCTCTCCGTGAAGCTGAAGCTGAATCCGTCTTTCCGCAGAATTCAGACGATAACGACGATAACTTTGACGTGGAACCTGCAGATTTTAGTGCACCTTATGTATCGCTGAGTGATTATAGGAGGATTCGGAACATGGAGCGTTTCCGACAGATAGCCAAGGAAAGCGCGACTCACTATGCTCGGTTCACGTCAGAGGACAGCGCAGATGAAAGGCCGTCGTCTTCTGCTGCGCCTCAGGGAATTGACGATTCCACATCTCCGTTTTCGATCTCGATGAAGGCTATCAAAGAGGGAGCGACGAAAAAGAAGGGGCGTGAGACGTGGGTTGCGAAGAGTCAAAAGAGGGAGAAGAGGGTCTGTGTTCCCTCATTGCAAGAACTGTGTCTCAGAACTCTCGCGGACAATGCTGATGCCATGGTTTCCCTTGAGGGTGTACCGGATGAGTTGAGGCACAAGCTTTGCAAACTGCTCTGTGACTCGAGAAAGATGAATAGTCACTTTCTTGAACTTCTTCTCAGCGGCTCTCCCACGGAGATTCGCCTGAGAGATTGCTCGTGGTTGACGGTGGAACAGTTTGCCGAATGTTTTCATTCGTGTGACACTGGAAGATTGGAGGTGCTGCAACTTGACCAGTGTGGAAGGTGTATACCTGATTATGCATTATTTGGTCCTCTGAGACCGTCACCATGGTGGTTGCCGAGATTAGTTAATCTGTCCCTCAGTGGTGCATGCCGTCTTTCAGACAAGGGGTTGCATGTGCTAGTTTCTTCTGCTCCATCACTAAGATCAATTAATTTAAGCCAGTGCTCCCTTCTCTCATCTGTCAGTGTCAATATTTTGGCGCAATCGTTGGGATCCCTACTGAAAGAGTTATATCTTGATGATTGCCTAACCATTGATGCTGCACAAATTGTGCCAGCATTGAAGAAACTCGAACATTTAGAAGTGTTATCATTGGCTGGAATTCAAACTGTCTCTGATGAATTTATCGGGGATTACATCACCGCACGTGGTCAGAACATGAAGGAGCTTGTTTTAAAGGACTGTAGAAAATTAACCAATGCATCAATAAAAGTCATTGCCGAGCACTGTCCCGGGTTGTGTGCACTCGATCTTATGTATTTGGACAACTTGACGGATTTATCCATGGGATATCTTACGAATAACTGTCGAGTACTCCATACATTGAAGCTCTGCCGTAATCCATTCAGTGATGAAGCAATTGCTGCATTTTTGGAGATTGCTGGAGGGTCCTTAACAGAACTTTCACTTAATAATATTAAGAAGGTTGGGCACCATACGGCCTTATCTCTTGCTAGTCATTCAAAAAATTTGCATACTCTAGATCTGTCTTGGTGCCGAAATTTGACAGACAATGAGTTGGGTTTGATAGTAGATAGCTGCTTCTCACTGAGGTTGCTTAAACTTTTTGGATGCTCACTGGTAACAGATGTTTTTCTCAATGGGCACTCAAACCCAGAGATTCAGATCCTAGGATTGAAGATGTCTCCTTTATTGCAAAATGTCAGAATGCCTGATACCTGTGAAGCTCCTTTACGTTATTCATCAGTCTCGGCAGATTTGATGTATAAATGA 2127 0.4659 MLPFNQTTLTPKPLNPTPSPNHHHQPPSPPPPSSSSSTAQTMTNTNPILDSNPPNLEGDSDSDIDALINAFFEPNPQFPSLDHLQGSTSDAKESSLKRGLDTGDDSSQAPIPLKRGRIDNVFFHRADLHAVIQIQNPIPSPLPLSQSLSHAAATNGDTQAVEGQGKRPVFDSDFLSRALREAEAESVFPQNSDDNDDNFDVEPADFSAPYVSLSDYRRIRNMERFRQIAKESATHYARFTSEDSADERPSSSAAPQGIDDSTSPFSISMKAIKEGATKKKGRETWVAKSQKREKRVCVPSLQELCLRTLADNADAMVSLEGVPDELRHKLCKLLCDSRKMNSHFLELLLSGSPTEIRLRDCSWLTVEQFAECFHSCDTGRLEVLQLDQCGRCIPDYALFGPLRPSPWWLPRLVNLSLSGACRLSDKGLHVLVSSAPSLRSINLSQCSLLSSVSVNILAQSLGSLLKELYLDDCLTIDAAQIVPALKKLEHLEVLSLAGIQTVSDEFIGDYITARGQNMKELVLKDCRKLTNASIKVIAEHCPGLCALDLMYLDNLTDLSMGYLTNNCRVLHTLKLCRNPFSDEAIAAFLEIAGGSLTELSLNNIKKVGHHTALSLASHSKNLHTLDLSWCRNLTDNELGLIVDSCFSLRLLKLFGCSLVTDVFLNGHSNPEIQILGLKMSPLLQNVRMPDTCEAPLRYSSVSADLMYK 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05443 708 MobiDBLite consensus disorder prediction 184 204 - -
Viun3g05443 708 MobiDBLite consensus disorder prediction 13 34 - -
Viun3g05443 708 MobiDBLite consensus disorder prediction 246 265 - -
Viun3g05443 708 MobiDBLite consensus disorder prediction 143 167 - -
Viun3g05443 708 FunFam RNI-like superfamily protein 291 509 - -
Viun3g05443 708 FunFam DNA repair protein rhp7 isoform A 595 694 - -
Viun3g05443 708 MobiDBLite consensus disorder prediction 143 161 - -
Viun3g05443 708 SMART LRR_CC_2 541 566 IPR006553 -
Viun3g05443 708 SMART LRR_CC_2 435 460 IPR006553 -
Viun3g05443 708 SMART LRR_CC_2 619 644 IPR006553 -
Viun3g05443 708 SMART LRR_CC_2 567 591 IPR006553 -
Viun3g05443 708 SMART LRR_CC_2 409 434 IPR006553 -
Viun3g05443 708 SMART LRR_CC_2 515 540 IPR006553 -
Viun3g05443 708 SMART LRR_CC_2 593 618 IPR006553 -
Viun3g05443 708 MobiDBLite consensus disorder prediction 77 112 - -
Viun3g05443 708 Gene3D Ribonuclease Inhibitor 295 686 IPR032675 -
Viun3g05443 708 MobiDBLite consensus disorder prediction 35 58 - -
Viun3g05443 708 PANTHER UNCHARACTERIZED 297 682 - -
Viun3g05443 708 MobiDBLite consensus disorder prediction 236 265 - -
Viun3g05443 708 MobiDBLite consensus disorder prediction 1 62 - -
Viun3g05443 708 SUPERFAMILY RNI-like 352 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05443 Viun-Chr3 60396408 60400804 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05443 K15082 - gmx:100798274 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05443 3 60396408 60400804 Viun3g05443 3 60396408 60400804 ECH
Viun3g05443 3 60396408 60400804 Viun9g00478 9 3392488 3397737 PCT