Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00413 ATGGCGTGGCTGCTTCGCACCGCTAACTCTTCCCTCCTTAAATGTTCTTTCTTCCATTCCGACCTTCTGACGCGCTTTTGCTTCAAGCCAGGACTATTGGGCACGTCTCAAGTGTTGAACTTTTCAACTCGAAAAAGGAGGTCTAAATCAGATGGAAGTGACTCAGGTGAAGAGGGCATGTCTAAGAAAGATGTGGCCTTACAACAAGCTATTGATCAGATCACTTCTGCATATGGGAAGGGATCTATCATGTGGCTTGGTCGTTCTGTGGCACCTAAAAATATTCCTGTGGTGTCTACTGGTTCATTTGCTCTTGATATAGCACTTGGGGTTGGAGGTCTTCCAAAGGGGCGTGTTGTGGAAATATTTGGTCCGGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTGATTGCAGAAGCACAAAAGCTAGGAGGCTACTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGACACTTGCAGAGTCAATTGGTGTAAATACTAAGAACTTGCTTCTTTCACAACCTGATTGTGGTGAACAAGCACTTGGCCTTGTGGATACTTTAATCCGGAGTGGTTCGGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAAGCTAGGTTGATGAGTCAGGCTCTTCGGAAATTGTGCCACTCTTTGTCTCTTTCACAGTGTATATTGGTTTTTATAAACCAGGTGAGGTCAAAGATTTCTACTTTTGGGGGATTTGGTGGTCCTACTGAAGTTACATGTGGTGGTAATGCACTGAAGTTTTATGCTTCTGTGAGGCTAAATATCAAAAGAATTGGGTTTATCAAGAAGGGGGAAGAGACTTTGGGAAGTCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAACTGCACAGTTTGAGCTTGAGTTTGGCAAGGGTATAAGTAGAGAAGCAGAGGTTATAGAGTTGAGCATAAAACACAAACTCATAAGGAAGAGTGGTTCATTTTATGAATATAACGGCCAGAATTTCCATGGCAAGGATGCTCTAAAGAGGTTTCTGGTGGACAGTGACAGTGTACAAGAATTAGCAACAAAGCTCAGGGAGAAGATTCTTAATGCGGCTCCGGAACTTGACCCGGAGGAGCAGGTGATGATCGAAGACGTTATGGAACAAATGGAAGAAATGGTATCTCTTGATTCTACTGATGAAACTGCTTCTGATGCTGCTGCTGCTGTAGAAGCATAA 1293 0.4393 MAWLLRTANSSLLKCSFFHSDLLTRFCFKPGLLGTSQVLNFSTRKRRSKSDGSDSGEEGMSKKDVALQQAIDQITSAYGKGSIMWLGRSVAPKNIPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALGLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILVFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFIKKGEETLGSQVLVKVVKNKHAPPFKTAQFELEFGKGISREAEVIELSIKHKLIRKSGSFYEYNGQNFHGKDALKRFLVDSDSVQELATKLREKILNAAPELDPEEQVMIEDVMEQMEEMVSLDSTDETASDAAAAVEA 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00413 430 CDD RecA 94 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun9g00413 430 Pfam recA bacterial DNA recombination protein 66 330 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun9g00413 430 ProSiteProfiles RecA family profile 2. 263 334 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Viun9g00413 430 Hamap Protein RecA [recA]. 63 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun9g00413 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 329 IPR027417 -
Viun9g00413 430 FunFam Recombinase RecA 92 390 - -
Viun9g00413 430 Gene3D - 93 389 IPR027417 -
Viun9g00413 430 PRINTS RecA protein signature 224 253 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun9g00413 430 PRINTS RecA protein signature 358 375 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun9g00413 430 PRINTS RecA protein signature 152 181 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun9g00413 430 PRINTS RecA protein signature 272 300 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun9g00413 430 PRINTS RecA protein signature 305 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun9g00413 430 PRINTS RecA protein signature 186 215 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun9g00413 430 MobiDBLite consensus disorder prediction 44 61 - -
Viun9g00413 430 ProSitePatterns recA signature. 275 283 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Viun9g00413 430 PANTHER RECA 43 395 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun9g00413 430 SMART AAA_5 116 290 IPR003593 GO:0016887
Viun9g00413 430 MobiDBLite consensus disorder prediction 44 63 - -
Viun9g00413 430 SUPERFAMILY RecA protein, C-terminal domain 330 384 IPR023400 -
Viun9g00413 430 ProSiteProfiles RecA family profile 1. 94 253 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Viun9g00413 430 NCBIfam recombinase RecA 63 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00413 Viun-Chr9 2962538 2968617 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00413 K03553 - gmx:100798983 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00413 9 2962538 2968617 Viun9g00413 9 2962538 2968617 ECH
Viun3g05373 3 59929971 59937472 Viun9g00413 9 2962538 2968617 PCT