Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05373 ATGTCCAAGAAAGAGTTGGCCCTTCAACAAGCTCTTGATCAGATCACTTCTGCATTTGGAAAGGGATCCATCATGTGGCTTGGTCGCTCTGTCTCACCAAAAAATGTGCCTGTGGTGTCGACAGGTTCTTTTTCTCTTGATATAGCACTAGGAATTGGTGGTCTTCCAAAGGGACGCGTAGTTGAAATATATGGGCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCAGAAGCACAGAAGCAAGGAGGCTATTGTGTCTTTGTCGATGCTGAGCATGCCCTTGACAAGACACTTGCAGAGTCTATTGGGGTGAATACAGAAAACTTACTTCTCTCCCAACCTGATTGTGGTGAACAAGCTCTCAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCACTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCACTTCGAAAATTGAGCCATGCCTTATCACTTTCTCAAAGTATATTAATTTTTATAAATCAGGTGAGGTCAAAGATTTCAACCTTTGGGGGATTTAGTGGGCCTACTGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCTGTGCGTCTAAATATCAAGAGAACAGGGTTTGTCAAGAAGGGTGAAGAGATTTTGGGAAGCCAGGTTCTGGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCGTTTAAAACTGCCGAGTTTGAGCTTGAGTTTGGCAAGGGGATATGTAAAGAAACAGAAATTATAGATTTAAGCGTACAACACAAACTAATCTTAAAGGCTGGTGCAATGTATTACTATAACGAACAGAATTTCCGCGGGAAGGATGCCCTAAAGAGTTTCCTAGCTGAGAATTGTAGCGCATTAGAAGAACTTGAAACGAAGCTCAGAGAAAAGGTTCTTAATGTTGAAACAGAACAGGTACAAGAATCAGATGTTATTAAGGGAGATGTTACCGAAGAAATTACATCAGTTAATTCTACTGTCGAAGAAACAGCTGTTGTAGAAGCATGA 1098 0.4199 MSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFSLDIALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHALSLSQSILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRTGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELEFGKGICKETEIIDLSVQHKLILKAGAMYYYNEQNFRGKDALKSFLAENCSALEELETKLREKVLNVETEQVQESDVIKGDVTEEITSVNSTVEETAVVEA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05373 365 Hamap Protein RecA [recA]. 4 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun3g05373 365 PRINTS RecA protein signature 246 275 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun3g05373 365 PRINTS RecA protein signature 299 316 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun3g05373 365 PRINTS RecA protein signature 213 241 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun3g05373 365 PRINTS RecA protein signature 165 194 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun3g05373 365 PRINTS RecA protein signature 93 122 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun3g05373 365 PRINTS RecA protein signature 127 156 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun3g05373 365 PANTHER RECA 1 339 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun3g05373 365 ProSiteProfiles RecA family profile 2. 202 275 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Viun3g05373 365 ProSitePatterns recA signature. 216 224 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Viun3g05373 365 SUPERFAMILY RecA protein, C-terminal domain 272 327 IPR023400 -
Viun3g05373 365 Gene3D - 34 336 IPR027417 -
Viun3g05373 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 270 IPR027417 -
Viun3g05373 365 CDD RecA 35 272 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun3g05373 365 SMART AAA_5 57 231 IPR003593 GO:0016887
Viun3g05373 365 Coils Coil 317 337 - -
Viun3g05373 365 FunFam Recombinase RecA 33 333 - -
Viun3g05373 365 Pfam recA bacterial DNA recombination protein 7 270 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun3g05373 365 ProSiteProfiles RecA family profile 1. 35 194 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Viun3g05373 365 NCBIfam recombinase RecA 4 326 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05373 Viun-Chr3 59929971 59937472 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05373 K03553 - gmx:100781271 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05373 3 59929971 59937472 Viun3g05373 3 59929971 59937472 ECH
Viun3g05373 3 59929971 59937472 Viun9g00413 9 2962538 2968617 PCT