Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00381 ATGAACATTCACCATCTGCAACAGCTTCATAATCATCAACCTATGACCATGAAGATGGATTCCATGAGGAAGAGGGAGAGAAACAAAGGCATGGAGAAAGAGAGGCTTCAAGTCATGGATCTCAGTGGCATGTCTTTGGACTCTCTTCCCAAACCTGCTCTTGATTTGGCCACCATTTGCAAGTTGGACTTATCTAATAACAATCTCCAGGACATTCCTGAATCCTTAACTGCGAGACTGCTAAACATGGAGGTGTTGGATGTTCGGTCCAACCAGCTTAAGTCTCTTCCTAATTCCATTGGTTGTCTCTCTAAGCTTAAGGTTTTAAATGTCTCAGGCAACTTCATCGAATCCCTCCCCAAAACCATTGAGAATTGCAGAGCATTGGAAGAACTGAATGCGAACTTCAACAAGCTGAGCAAGTTACCAGACACAATAGGGTTCGAGCTGATAAACCTGAAGAAGCTCTCAGTGAATTCCAACAAGCTGGTTTTTCTTCCTAGCTCCACCTCACACCTAACATCACTGAAGGTTCTGGATGCACGGTTGAATTGCCTAAGGTCACTTCCGGAGGATCTTGAGAACCTCATCAACCTTGAGACACTGAACGTGAGCCAGAACTTCCAGTACTTGGAAACCCTCCCTTATTCCATAGGGCTCCTCTTGTCCCTGGTTGAACTTGACGTGAGCTACAACAAGATCAAGACCTTGCCTGAATCCATTGGGTGCCTGAAGAACCTGAAGAAGCTGAGCGTTGAAGGGAACCCTCTGGTTTGTCCCTCGATGGAGGTGGTGGAGCAGGGTCTGCACGTGGTGATGGAGTTCATGCAGCATAAGATGAACTCGAGTGGTGAGCGCCCAGCGAAGAAAAGGTGGTGGATGATGAAGATGGTGAAGTGTGGAACCTTCAACAAGCAAGTGAGAGGTGGGAAAAGACCAGAGCATGAGGGTTACAACATGCTTAAGCACCAGAAAATCAATGGTCTTGCTTCGCCAGGCTTCATGGGAATGCTTTCACCTCTTCGCTTCTTCTCTTCGCCCCGCCATTCCTTCGGCTGA 1059 0.4731 MNIHHLQQLHNHQPMTMKMDSMRKRERNKGMEKERLQVMDLSGMSLDSLPKPALDLATICKLDLSNNNLQDIPESLTARLLNMEVLDVRSNQLKSLPNSIGCLSKLKVLNVSGNFIESLPKTIENCRALEELNANFNKLSKLPDTIGFELINLKKLSVNSNKLVFLPSSTSHLTSLKVLDARLNCLRSLPEDLENLINLETLNVSQNFQYLETLPYSIGLLLSLVELDVSYNKIKTLPESIGCLKNLKKLSVEGNPLVCPSMEVVEQGLHVVMEFMQHKMNSSGERPAKKRWWMMKMVKCGTFNKQVRGGKRPEHEGYNMLKHQKINGLASPGFMGMLSPLRFFSSPRHSFG 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00381 352 Gene3D Ribonuclease Inhibitor 2 145 IPR032675 -
Viun9g00381 352 ProSiteProfiles Leucine-rich repeat profile. 82 103 IPR001611 GO:0005515
Viun9g00381 352 SUPERFAMILY L domain-like 36 259 - -
Viun9g00381 352 MobiDBLite consensus disorder prediction 1 15 - -
Viun9g00381 352 Gene3D Ribonuclease Inhibitor 146 299 IPR032675 -
Viun9g00381 352 Pfam Leucine rich repeat 61 114 IPR001611 GO:0005515
Viun9g00381 352 SMART LRR_sd22_2 221 243 - -
Viun9g00381 352 SMART LRR_sd22_2 103 128 - -
Viun9g00381 352 SMART LRR_sd22_2 244 267 - -
Viun9g00381 352 SMART LRR_sd22_2 173 195 - -
Viun9g00381 352 SMART LRR_sd22_2 80 101 - -
Viun9g00381 352 PANTHER - 34 147 - -
Viun9g00381 352 ProSiteProfiles Leucine-rich repeat profile. 105 126 IPR001611 GO:0005515
Viun9g00381 352 MobiDBLite consensus disorder prediction 1 21 - -
Viun9g00381 352 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Viun9g00381 352 ProSiteProfiles Leucine-rich repeat profile. 58 79 IPR001611 GO:0005515
Viun9g00381 352 SMART LRR_typ_2 103 126 IPR003591 -
Viun9g00381 352 SMART LRR_typ_2 56 79 IPR003591 -
Viun9g00381 352 SMART LRR_typ_2 150 172 IPR003591 -
Viun9g00381 352 SMART LRR_typ_2 127 149 IPR003591 -
Viun9g00381 352 SMART LRR_typ_2 173 196 IPR003591 -
Viun9g00381 352 SMART LRR_typ_2 80 102 IPR003591 -
Viun9g00381 352 SMART LRR_typ_2 221 244 IPR003591 -
Viun9g00381 352 SMART LRR_bac_2 103 122 - -
Viun9g00381 352 SMART LRR_bac_2 56 75 - -
Viun9g00381 352 SMART LRR_bac_2 126 145 - -
Viun9g00381 352 SMART LRR_bac_2 244 262 - -
Viun9g00381 352 SMART LRR_bac_2 221 240 - -
Viun9g00381 352 SMART LRR_bac_2 80 99 - -
Viun9g00381 352 SMART LRR_bac_2 196 217 - -
Viun9g00381 352 SMART LRR_bac_2 150 169 - -
Viun9g00381 352 SMART LRR_bac_2 173 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00381 Viun-Chr9 2679695 2683112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00381 49 287 Receptor kinase-like Gene Family AT5G46330 25.926 5.18e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00381 - - gmx:100776295 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00381 9 2679695 2683112 Viun9g00381 9 2679695 2683112 ECH
Viun3g05317 3 59573403 59576953 Viun9g00381 9 2679695 2683112 PCT