Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05317 ATGATGTACGAGCAACAGCAACGTTTTCAGCAGCCCATGTCTGTGCAGGTCGATTTCAGGAAGAAAACGGAGAGAAGCAAAGGCATAGAGGAAGAAAGGCTTGAAATAGTAGACTTGAGTGGCATGTCCTTGGACTCCCTTCCCAACCCCTCTCTTAATCTAGCCACCATTTGCAAGTTGGACCTCTCCAATAACAATCTTCAGAACATACCAGAGTCCTTAACAGCGAGACTGCTGAACATGGTGGTGTTGGACGTGCACTCCAACCAGCTTAGGTACCTTCCCAACTCCATTGGCTGCCTCTCCAAGATCAAGGTTTTGAATGTCTCTGGCAACCTCATCGAATACCTTCCCAAAACAATTGAAAATTGCAGAAGCTTAGAAGAACTGAATGCGAACTTCAACAAGTTGATCCAGCTTCCAGAGAACATAGGGTACGAACTGATAAACCTGAAGAAGCTATCGGTGAACTCGAACAAGCTGGTGTTCCTTCCTCGCTCGACAAGTCACCTAACCGCTCTGAAGATTCTGGACGTGCGTTTGAACTGCCTGAGATCTCTCCCAGAAGATCTGGAGAACCTGATAAACCTAGAAACTCTGAACGTGAGCCAGAACTTCCAGTACCTGGATTCTCTACCCTACTCGGTGGGGCTCCTCCTCTCCCTTGTGGAACTAGACGCCAGCTACAACAAGATCAGGTCCTTGCCGGACTCCGTCGGGTGCCTGAAGAAGTTGCAGAAGCTGAGCGTGGAGGGGAACCCTCTGAGTTCACCGCCGCCGGAAGTGATGGAGCAGGGATTGCATGCGGTGAAGGAATACCTGTGCCAGAAGATGAACGCGGGCCATCAGAGCCCCACGAAGAAGAAGTCGTGGGTGGGGAAGCTGGTGAGGTATGGCACCTTCAATGGACACACCAGCAGAGGTGTGAGCCGCGAGGAACGTGAAGCCTTCATCATGCCTGATTACAGACCAATCGATAGCCTCACCTCGCCGCGCTACACCGGCATGTTCTCGCCGCGTCGCCTCTTCTCACCCCGCAATTACTTCAGCGCCTGA 1056 0.5161 MMYEQQQRFQQPMSVQVDFRKKTERSKGIEEERLEIVDLSGMSLDSLPNPSLNLATICKLDLSNNNLQNIPESLTARLLNMVVLDVHSNQLRYLPNSIGCLSKIKVLNVSGNLIEYLPKTIENCRSLEELNANFNKLIQLPENIGYELINLKKLSVNSNKLVFLPRSTSHLTALKILDVRLNCLRSLPEDLENLINLETLNVSQNFQYLDSLPYSVGLLLSLVELDASYNKIRSLPDSVGCLKKLQKLSVEGNPLSSPPPEVMEQGLHAVKEYLCQKMNAGHQSPTKKKSWVGKLVRYGTFNGHTSRGVSREEREAFIMPDYRPIDSLTSPRYTGMFSPRRLFSPRNYFSA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05317 351 SMART LRR_bac_2 101 120 - -
Viun3g05317 351 SMART LRR_bac_2 171 190 - -
Viun3g05317 351 SMART LRR_bac_2 124 143 - -
Viun3g05317 351 SMART LRR_bac_2 148 167 - -
Viun3g05317 351 SMART LRR_bac_2 54 73 - -
Viun3g05317 351 SMART LRR_bac_2 219 238 - -
Viun3g05317 351 PANTHER - 34 145 - -
Viun3g05317 351 Gene3D Ribonuclease Inhibitor 2 144 IPR032675 -
Viun3g05317 351 Gene3D Ribonuclease Inhibitor 147 276 IPR032675 -
Viun3g05317 351 ProSiteProfiles Leucine-rich repeat profile. 221 242 IPR001611 GO:0005515
Viun3g05317 351 SMART LRR_typ_2 148 170 IPR003591 -
Viun3g05317 351 SMART LRR_typ_2 78 100 IPR003591 -
Viun3g05317 351 SMART LRR_typ_2 219 241 IPR003591 -
Viun3g05317 351 SMART LRR_typ_2 54 77 IPR003591 -
Viun3g05317 351 SMART LRR_typ_2 125 147 IPR003591 -
Viun3g05317 351 SMART LRR_typ_2 171 194 IPR003591 -
Viun3g05317 351 SMART LRR_typ_2 101 124 IPR003591 -
Viun3g05317 351 SMART LRR_typ_2 242 265 IPR003591 -
Viun3g05317 351 SUPERFAMILY L domain-like 34 264 - -
Viun3g05317 351 ProSiteProfiles Leucine-rich repeat profile. 56 77 IPR001611 GO:0005515
Viun3g05317 351 Pfam Leucine rich repeat 59 114 IPR001611 GO:0005515
Viun3g05317 351 Pfam Leucine rich repeat 150 205 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05317 Viun-Chr3 59573403 59576953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05317 52 265 Receptor kinase-like Gene Family AT5G51350 30.493 8.91e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05317 - - gmx:100783239 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05317 3 59573403 59576953 Viun3g05317 3 59573403 59576953 ECH
Viun3g05317 3 59573403 59576953 Viun9g00381 9 2679695 2683112 PCT