Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00360 ATGGCCACCGCCCAACCACTCCAGAATGGTTCCGCCGGCAACCTACTCTCGCCGGACAATGTCTCCGCCACACAGCCACCGGCCGAGGCGGAGGCGGACACCACTGCGGCGGCGCCTCCTCCGGAAAGGAGGTGGCTGGGGTGGCCTGGAGACTGCGTGTTTCGTCTCATCGTGCCAGTGGGGAAAGTTGGGAGCATCATAGGGCGCAAGGGAGAACTGATAAAGAAGATGTGTGAAGAGACACGATCTCGCATTCGCGTTCTCGACGCTCCTATCGGCACTCCTGATCGAATTGTACTTGTATCCGGGAGGGAAGAGACAGAGGCAGCCCTTTCCCCTGCAATGGATGCGGTGATAAGGATATTCAAGCGTGTCTTTGGATTATCTGAAATTGATGCTGAGAATAAAGAATCTGCTGCTGGTCTTGCATTTTGTTCCATCCGTTTATTGGTTGCATCGACACAGGCTATTAGTTTGATTGGAAAGCAAGGCTCATTAATAAAATCTATTCAGGAGAATACCAGTGCTTCTGTTAGAGTGCTGTCAGGAGATGAGGTGCAATTTTATGCTACTGCGGATGAGAGGATTGTGGAAATTCAGGGAGAAACCTTGAAGGTCCTTAAAGCTCTGGAAGCAGTAGTTGGCCATCTGAGGAAATTTTTGGTTGATCACAGCGTTCTTCCCCTATTTGAGAGAAATTTCAATGCACCAATCTCGCAAGACCGTCAAGCAGAGACCTGGTCTGACAAGTCATTGTTGAATAGTACTTCACGTACCAGTGTATTTCCCGATATGCCTCTTCCATCAAAAAGGGATTCTATCTTAGCTGAGCGTGAAAGTCAATTGGACTCATTGCTCCCTTCTTCCACCATGTCTCTCTATGGGCAGGATTCTTCACTTTCTGGTGTTCGTTCGGCTCTAGGCCGTGTTGGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTATCCTATGCAGAAGACATCATAGGTATTCACGGGACTAATATTGATTACATTCGTCGCACCAGTGGCGCTGTATTGACTGTGCAAGAGAGCAGGGTGCCTGATGAAATCATTGTAGAAATAAAAGGCACCTCATCTGAGGTTCAAACAGCGCAACAGTTAATTCAGGATTTTATAAGCACTCACAAAGAACCTCTCACTATCAATTATGGGAGGTTAGATGCAGGTTCAAGGTCTTCGTACTCTCAATTGGGCACTGCATCACGCCTCCCATCTTCGTTGTCATCACAACCATACACAGGTTATGGATCTTCTGGTTTAGGAGACTACAGTACTTTCAGGCTTTAA 1323 0.4747 MATAQPLQNGSAGNLLSPDNVSATQPPAEAEADTTAAAPPPERRWLGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPIGTPDRIVLVSGREETEAALSPAMDAVIRIFKRVFGLSEIDAENKESAAGLAFCSIRLLVASTQAISLIGKQGSLIKSIQENTSASVRVLSGDEVQFYATADERIVEIQGETLKVLKALEAVVGHLRKFLVDHSVLPLFERNFNAPISQDRQAETWSDKSLLNSTSRTSVFPDMPLPSKRDSILAERESQLDSLLPSSTMSLYGQDSSLSGVRSALGRVGAPIVTTVIQTMQIPLSYAEDIIGIHGTNIDYIRRTSGAVLTVQESRVPDEIIVEIKGTSSEVQTAQQLIQDFISTHKEPLTINYGRLDAGSRSSYSQLGTASRLPSSLSSQPYTGYGSSGLGDYSTFRL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00360 440 Pfam KH domain 320 382 IPR004088 GO:0003723
Viun9g00360 440 Pfam KH domain 147 213 IPR004088 GO:0003723
Viun9g00360 440 Pfam KH domain 54 111 IPR004088 GO:0003723
Viun9g00360 440 Gene3D - 51 221 - -
Viun9g00360 440 MobiDBLite consensus disorder prediction 1 29 - -
Viun9g00360 440 SMART kh_6 143 218 IPR004087 GO:0003676
Viun9g00360 440 SMART kh_6 316 385 IPR004087 GO:0003676
Viun9g00360 440 SMART kh_6 50 123 IPR004087 GO:0003676
Viun9g00360 440 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 313 386 IPR036612 GO:0003723
Viun9g00360 440 ProSiteProfiles Type-1 KH domain profile. 144 213 - -
Viun9g00360 440 ProSiteProfiles Type-1 KH domain profile. 317 380 - -
Viun9g00360 440 Gene3D K Homology domain, type 1 315 389 IPR036612 GO:0003723
Viun9g00360 440 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 38 405 - -
Viun9g00360 440 MobiDBLite consensus disorder prediction 1 43 - -
Viun9g00360 440 CDD KH-I_PEPPER_rpt1_like 51 119 - -
Viun9g00360 440 CDD KH-I_PEPPER_rpt2_like 148 218 - -
Viun9g00360 440 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 141 225 IPR036612 GO:0003723
Viun9g00360 440 ProSiteProfiles Type-1 KH domain profile. 51 118 - -
Viun9g00360 440 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 41 123 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00360 Viun-Chr9 2472339 2480819 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00360 K21444 - gmx:100815466 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00360 9 2472339 2480819 Viun9g00360 9 2472339 2480819 ECH
Viun3g05298 3 59390284 59395666 Viun9g00360 9 2472339 2480819 PCT