Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05298 ATGGCCACTCTCGACCCAATCCAAAACGGCACAACCAATCCCTTGCTATCTGAAAATCCTGACCCCGCCGAACCTCCCTCCACCGCCGCCGACGATCCCACTCCTGAGGTTGCGGCTGAGAAGCGGTGGCCGGGATGGCCCGGCCTCTGCGTGTTCCGCCTCATCGTGCCGGTCCTCAAAGTCGGAAGCATCATTGGCCGCAAGGGGGAGCTCATCAAGAAGACCTGCGAGGAAACGAAAGCTCGCATACGAGTCCTCGACGGCGCGGTTGGCACTCCCGATCGAATCGTACTCATATCAGGGAAGGAAGAGCCAGAGACACCACTTTCTCCTGCAATGGATGCTGTCATAAGGATTTTTAAACGTATCTCCGGGTTGTCTGAAATTGATGGCGAGAATAAAGCCGCAGGGCTTGCGTTTTGTTCTGTTCGTTTATTGGTGGCCTCAACACAGGCTATCAATTTGATTGGAAAGCAGGGTTCATTAATTAAATCTATACAAGAAAATACCAGTGCATCTGTTAGAGTACTATCTGGAGATGAGGTTCCCTTTTATGCTGCTGCGGATGAGAGGATTGTTGAGTTGCAGGGAGAAGCCATGAAGGTCCTTAAGGCTCTGGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGGTTGACCCCAGTGTTCTTCCCTTATTTGAGAAAAGTTACAATGCAACAATCTCCCAAGAGCGGCAAGTAGATTCAACTTGGGTTGACAAACAATCACTGCATAGTGCTTCACAGCCTAGCATTGCAAATGACATTCCGCTTTCATCAAAAAGGGATTCTCTGTTTGCTGACCGTGAAAGCCATTTGGATTCGTTGCTCCCTCCCTCCACAATGTCAGTATATGGTCAAGATTCTTCCCTTTCTAGTCTTCGTTCTTCAGCACTCGGTCGTACCAGTGCTCCTCCTATTGTTACCACGGTAATACAAACAATGCAAATACCACTGTCCTATGCAGAAGACATTATTGGTATACAAGGAACTAATATTGATTACATTCGCCGCACCAGTGGAGCTATATTGACCGTGCAGGAGAGCCGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAGACAGCACAACAGTTGATTCAGGAAGTTATAAGTAATCACAAAGAACCTGTGGGTAGTAATTACAGCAGGTTAGATACAGGTCTGAGGTCTTCTTACCCTCAGCTGGGCAGTTCCTCTTATTCGTCATCTTCCTTGTCGTCTCAACCCTACAGCGGTTATGGATCTTCTGGTCTTGGAGGCTATAGTACTTTCAGACTTTGA 1320 0.4795 MATLDPIQNGTTNPLLSENPDPAEPPSTAADDPTPEVAAEKRWPGWPGLCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTPDRIVLISGKEEPETPLSPAMDAVIRIFKRISGLSEIDGENKAAGLAFCSVRLLVASTQAINLIGKQGSLIKSIQENTSASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLVDPSVLPLFEKSYNATISQERQVDSTWVDKQSLHSASQPSIANDIPLSSKRDSLFADRESHLDSLLPPSTMSVYGQDSSLSSLRSSALGRTSAPPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPVGSNYSRLDTGLRSSYPQLGSSSYSSSSLSSQPYSGYGSSGLGGYSTFRL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05298 439 Pfam KH domain 319 381 IPR004088 GO:0003723
Viun3g05298 439 Pfam KH domain 143 209 IPR004088 GO:0003723
Viun3g05298 439 Pfam KH domain 52 104 IPR004088 GO:0003723
Viun3g05298 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 43 104 IPR036612 GO:0003723
Viun3g05298 439 MobiDBLite consensus disorder prediction 1 39 - -
Viun3g05298 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 312 386 IPR036612 GO:0003723
Viun3g05298 439 CDD KH-I_PEPPER_rpt2_like 142 214 - -
Viun3g05298 439 ProSiteProfiles Type-1 KH domain profile. 140 209 - -
Viun3g05298 439 Gene3D - 50 216 - -
Viun3g05298 439 ProSiteProfiles Type-1 KH domain profile. 316 379 - -
Viun3g05298 439 ProSiteProfiles Type-1 KH domain profile. 49 116 - -
Viun3g05298 439 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 38 409 - -
Viun3g05298 439 MobiDBLite consensus disorder prediction 1 18 - -
Viun3g05298 439 CDD KH-I_PEPPER_rpt1_like 50 117 - -
Viun3g05298 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 138 219 IPR036612 GO:0003723
Viun3g05298 439 Gene3D K Homology domain, type 1 314 389 IPR036612 GO:0003723
Viun3g05298 439 SMART kh_6 315 384 IPR004087 GO:0003676
Viun3g05298 439 SMART kh_6 139 214 IPR004087 GO:0003676
Viun3g05298 439 SMART kh_6 48 121 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05298 Viun-Chr3 59390284 59395666 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05298 K21444 - gmx:100802089 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05298 3 59390284 59395666 Viun3g05298 3 59390284 59395666 ECH
Viun3g05298 3 59390284 59395666 Viun9g00360 9 2472339 2480819 PCT