Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00349 ATGGGAACGTTTCAGAGCTTCAGAAAAGCCTATGGAGCTCTCAAGGATTCTACCAAGGTTGGCCTTGCCAAAGTCAATAGCGAATACAAGGACTTGGATATCGCAATTGTAAAAGCTACCAATCACGTGGAATACCCTCCCAAGGAGCGTCATGTTCGAAAAATATTCTATGCAACATCAGCACACCAGCCACGAGCAGATGTATCATACTGCATTCATAAACTTTCTAAGAGACTTTCCAAAACACGAAGCTGGATAGTTGCTATAAAGACATTAATAGTGATTCATAGGACTTTGAGAGAGGGTGATCCTACCTTTAGAGAAGAAATGCTTAATTACTCACGCAGGGGACATGTTCTCCAAATATCCAATTTCAAAGATGATTCAAGCCCTCAAGCTTGGGATTGTTCTGCATGGGTTCGAACGTATGCACTATTTTTGGAAGAAAGACTTGAATGCTTTAGGGTGCTTAAATATGATATAGAATCAGAACGTTTGACAAAATCATCACCAACTGCAACTAAAGCACATAGTAGAACTCGATCACTGAATAGTGAAGACCTATTGGGACAGTTACCTGCACTGCAGCAACTCCTATATCGCCTTATTGCTTGTCAGCCTGAAGGATGCTCTTATAGCAACTACCTAGTGCAGTATGCATTGGCTCTGGTTTTGAAAGAAAGTTTCAAAATATATTGTGCACTCAATGATGGAATCATCAATCTCGTGGATATGTTCTTCGATATGACAAGGCATGATGCAGTGAAGGCTCTAAACATTTATAAAAGAGCTGGTCAACAGGCTGAGAATCTTGCTGACTTCTATGAATACTGCAAGGGCTTGGAACTTGCCAGAAATTTCCAGTTTCCAACACTGAGACAGCCACCTCCGTCTTTCCTTGCAACTATGGAAGAATACATTAGAGAAGCACCTCAAACAGGATATGTTAACAGGAGATTGGAGTATCAAGAAAATGATGATGAATCATCTAAAGAAGATTCAGAATCCGATGAAACTGAAGATCCTCAAGAAAATGAAGAACACTACGAGGAAATGAACGAGGAAGATTCGGTAGCAGGGGATGAAGCACAATTAAAGGAGGAGGAGGTGGAGGTTGAGCCTCCTCCATTGATATCAACCGATGATGGTACAAATGATTTGTTGGGACTTAATGAAATAAATCTAAAAGCTATGGAACTGGAGGAAAACAATGCTATGGCTCTTGCAATTGTACCACCTGGAAGTAACCCAAACAATCTTGCTTTGAGTAGCATTGATGGAACTACTGGTTGGGAACTTTCATTAGTTGCAGCACCAAGTAAACACACTGCTCAAGTCACAGATCGCAAAATGGCCGGTGGTTTTGATAACCTGTTATTGGACAGTCTGTATGAAGATGAAAATGCGAGAAGACAACTTCAACTCCAAAATGCAGGTTATGGACATGGCGCAACCGCCATTGATGCACAGAACAACCCTTTTGATCATTATAACCAACAACAACAAGATCCTTTTGTAATGTCCAACAACATAGCACCTCCAACCAATGTGCAATTGGCACTACTAGCTCAACAACAACAACAACACATGATGTTCCAACAGCCACAGATGATGTACCAACAACAACAACAACAGCAACCTCAACAACACGACATGATGATGATGGTTCCTCACCAGCACCAGCAGCAACCACAGAACAACCAGTACTCTCAACACATGCAGAGTCCAGGTTCTCATAATCCCTTTGGAGATCCTTTGCCAGTACCAAACTACAACCACAACTACGTCTCCCAGCAAGGAAATTACAATTTAATGTAG 1818 0.4142 MGTFQSFRKAYGALKDSTKVGLAKVNSEYKDLDIAIVKATNHVEYPPKERHVRKIFYATSAHQPRADVSYCIHKLSKRLSKTRSWIVAIKTLIVIHRTLREGDPTFREEMLNYSRRGHVLQISNFKDDSSPQAWDCSAWVRTYALFLEERLECFRVLKYDIESERLTKSSPTATKAHSRTRSLNSEDLLGQLPALQQLLYRLIACQPEGCSYSNYLVQYALALVLKESFKIYCALNDGIINLVDMFFDMTRHDAVKALNIYKRAGQQAENLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIREAPQTGYVNRRLEYQENDDESSKEDSESDETEDPQENEEHYEEMNEEDSVAGDEAQLKEEEVEVEPPPLISTDDGTNDLLGLNEINLKAMELEENNAMALAIVPPGSNPNNLALSSIDGTTGWELSLVAAPSKHTAQVTDRKMAGGFDNLLLDSLYEDENARRQLQLQNAGYGHGATAIDAQNNPFDHYNQQQQDPFVMSNNIAPPTNVQLALLAQQQQQHMMFQQPQMMYQQQQQQQPQQHDMMMMVPHQHQQQPQNNQYSQHMQSPGSHNPFGDPLPVPNYNHNYVSQQGNYNLM 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00349 605 SMART enth_2 30 161 IPR013809 -
Viun9g00349 605 MobiDBLite consensus disorder prediction 359 373 - -
Viun9g00349 605 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Viun9g00349 605 MobiDBLite consensus disorder prediction 327 358 - -
Viun9g00349 605 FunFam Putative clathrin assembly protein 173 321 - -
Viun9g00349 605 PANTHER CLATHRIN ASSEMBLY PROTEIN 7 531 IPR045192 GO:0048268|GO:0072583
Viun9g00349 605 SUPERFAMILY GAT-like domain 178 309 - -
Viun9g00349 605 Gene3D ANTH domain 173 325 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Viun9g00349 605 MobiDBLite consensus disorder prediction 559 578 - -
Viun9g00349 605 Gene3D - 5 161 IPR008942 -
Viun9g00349 605 MobiDBLite consensus disorder prediction 322 386 - -
Viun9g00349 605 MobiDBLite consensus disorder prediction 559 590 - -
Viun9g00349 605 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Viun9g00349 605 SUPERFAMILY ENTH/VHS domain 30 162 IPR008942 -
Viun9g00349 605 CDD ANTH_N 32 154 - -
Viun9g00349 605 FunFam Clathrin assembly protein AP180 6 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00349 Viun-Chr9 2399827 2404512 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00349 K20044 - gmx:100786060 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00349 9 2399827 2404512 Viun9g00349 9 2399827 2404512 ECH
Viun3g05291 3 59344346 59350269 Viun9g00349 9 2399827 2404512 PCT