Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05291 ATGGGAACGTTCCGGACATTAAGAAAGGCCTACGGTGCTCTCAAAGACTCTACCAAGGTTGGCCTAGCCAAGGTCAATAGCGAATACAAGGATTTGGATATTGCTATTGTGAAGGCTACCAGTCATGTAGAATATCCCCCAAAGGAACGTCATGTCAGAAAGATATTCTATGCAACTTCAGCACACCAACCACGGGCCGATGTGGCTTACTGCATACACACACTTGCTAGGAGGCTTGCAAAGACACGGAATTGGATAGTTGCTGTAAAGACATTGATAGTCATTCATAGAATATTAAGAGAGGGTGATCCTACTTTCAAAGAAGACCTCATAAACTATGCGCGTAGGGGACGTTTTCTTCAAATATCCAATTTTAAAGATGACTCAAGTCCCCAAGCTTGGGATTGTTCTGCATGGGTTCGAACATATGCACTATTTTTAGAAGAAAGGCTTGAATGTTTTAGAATCCTTAAATATGACATCGAGGCTGACCGTTTATCAAAAGCATCACCCGTTAAAGCTAAGGGACATAGCAGAACACGGTCGTTGACTAAAGAAGGGCTATTGGAGCAGCTGCCTGCACTGCAGCAACTTCTATACCGCCTAGTTGCTTGTCAGCCTGAAGGTTTGGCTGTCAGCAGTTACCTAATACAGTATGCACTGGCCTTGGTGTTGAAAGAGAGCTTCAAAATATACTGTGCCCTGAATGATGGAATCATAAATCTTGTGGATGTGTTCTTTGATATGCCAAAATATGATGCAATCAAGGCGTTACACATTTATAAAAGAGCTAGCCAACAGGCTGATACTCTTGCTGAGTTCTATGAATACTGCAAGAGATTGGACCTTGCTAGGAATTTTCAATTTCCAATCTTGAGACAGCCACCTGCTTCATTTCTTGCCACGATGGAAGAGTACGTTAAAGAAGCACCCTTCAATACATCTAATAGACTGGAGTTTCACGAAAATGATCAATCACCTAAAAAGGAAGCAGAACCCAAAGAATCTGAAGAGGCTAAAACAACCGAAAAACCAGATGAAGAAGAGAAAGGGGAAGAACAGGTGCGTGAAGATGAACCAGAGCCTAAGGAGAAGGAAGTGGAGCTTCCTCCTTTGATATCAACTGATTCTACTGATGATTTGCTGGGTCTAACCGAAATAAATCCAAAAGCCCGGGAACTAGAAGAAAGCAATGCTTTGGCGCTAGCAATTGTACCAGCCGAAGGAAATAACTCGAGCAATCTTGCTTTGGCTGACACAAATGGAACTTCTGGTTGGGAACTTGCACTAGTCACAACACCAAGTAATCATACAAGCCAAGCGCCAGATCGAAGAATGGCTGGTGGGTTTGACCCGCTATTACTAGACAGTTTGTATGAAGATGAAAAGGCTAGGAGACAACTTCAACTCCGAAATGCAGGCTATGGATATGGGGAAATGGATACACATAATCCATTCAATCATCATAATCAGCAAGATCCATTTGCAATGTCCAACAACATAGCACCTCCAGCCAATGTGCAAATGGCATTCATGGCTCAGCAACAGCAACAACGACAAATGATGTTCCAGCAACATCAGCAACATAACATGATGATGGCCCCTTACCAGTATCCACAGACTCAATACCATCAGCAAATGCCAGTCATGGGTTCTTCTAATCCATTTGCTGATCCCTTACCGGTGCCCATCCATGGTTATAATTCCATGAATCATCAAGGGAACTACAATTTAATATAG 1740 0.4276 MGTFRTLRKAYGALKDSTKVGLAKVNSEYKDLDIAIVKATSHVEYPPKERHVRKIFYATSAHQPRADVAYCIHTLARRLAKTRNWIVAVKTLIVIHRILREGDPTFKEDLINYARRGRFLQISNFKDDSSPQAWDCSAWVRTYALFLEERLECFRILKYDIEADRLSKASPVKAKGHSRTRSLTKEGLLEQLPALQQLLYRLVACQPEGLAVSSYLIQYALALVLKESFKIYCALNDGIINLVDVFFDMPKYDAIKALHIYKRASQQADTLAEFYEYCKRLDLARNFQFPILRQPPASFLATMEEYVKEAPFNTSNRLEFHENDQSPKKEAEPKESEEAKTTEKPDEEEKGEEQVREDEPEPKEKEVELPPLISTDSTDDLLGLTEINPKARELEESNALALAIVPAEGNNSSNLALADTNGTSGWELALVTTPSNHTSQAPDRRMAGGFDPLLLDSLYEDEKARRQLQLRNAGYGYGEMDTHNPFNHHNQQDPFAMSNNIAPPANVQMAFMAQQQQQRQMMFQQHQQHNMMMAPYQYPQTQYHQQMPVMGSSNPFADPLPVPIHGYNSMNHQGNYNLI 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05291 579 FunFam Putative clathrin assembly protein 173 321 - -
Viun3g05291 579 SUPERFAMILY GAT-like domain 178 309 - -
Viun3g05291 579 Gene3D ANTH domain 172 323 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Viun3g05291 579 SMART enth_2 30 161 IPR013809 -
Viun3g05291 579 PANTHER CLATHRIN ASSEMBLY PROTEIN 8 520 IPR045192 GO:0048268|GO:0072583
Viun3g05291 579 MobiDBLite consensus disorder prediction 314 381 - -
Viun3g05291 579 MobiDBLite consensus disorder prediction 321 370 - -
Viun3g05291 579 Gene3D - 6 161 IPR008942 -
Viun3g05291 579 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Viun3g05291 579 CDD ANTH_N 32 154 - -
Viun3g05291 579 Pfam ANTH domain 31 308 IPR011417 GO:0005543
Viun3g05291 579 FunFam Clathrin assembly protein AP180 6 161 - -
Viun3g05291 579 SUPERFAMILY ENTH/VHS domain 30 162 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05291 Viun-Chr3 59344346 59350269 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05291 K20044 - vum:124839571 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05291 3 59344346 59350269 Viun3g05291 3 59344346 59350269 ECH
Viun3g05291 3 59344346 59350269 Viun9g00349 9 2399827 2404512 PCT