Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00345 ATGCCACCGGCGCTGTCTGATCCGTTGTCAGCGATTACGGCCACCTCCGACGCCGTTTTGAAGCCATCGAAGCCATCGGCACCGGAGAATCGGCGATTCCGGGATCTTAGAGGGTTGCAGTGGCGGATAAATCTTGGCGTGTTGCCGTGTTCGACTTCGACTTCAATTGATGATTTTCGTCGAGTCACGGCCAATTGTAGAAGAAGGTATGCTAGCTTGAGAAGGCGCCTTCTGGTTGAACCACATGTTCCAAAGAATGGGACTAATTCAGCCAATCTTGTCATTGACAATCCACTTTCACTAAATCCAGATAGTACATGGAGTCGTTTTTTCCGCAATGCAGAGCTGGAGAAAATGGTTGATCAGGATTTATCACGACTATACCCAGAACATGGCAGTTATTTCCAAGCACCAGGATGCCAAAGCATGTTGAGACGAATTTTGTTGCTGTGGTGTCTCAGGCACCCAGAATGTGGTTATAGACAAGGTATGCATGAGTTACTTGCTCCTCTGCTTTATGTACTGCAAGCTGATTTGGAGCGTCTCTCAGAGGTTCGGAAGCTTTACGAAGATCACTTTACAGATAGATTTGATGGCCTTTTAGGTCAAGAGAATGATCTTTCTTACAGCTTTGAATTTAGAAAGTCTCGAGAATTGATGGAGGATGGATTTGATTCCCATGGAAATTCTGTTAAAGTCAATAGTCTTGATGAACTTGATCCTGAGATACAGACCATTGTATTACTAAGTGATGCATATGGAGCTGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATGGAACATGATGCATACTGTATGTTTGATGCTTTAATGAACGGGGCTCATGGTTCGGTTGCAATGGCTGATTTCTTCTCTTCCTCTCCTATATCCGGGTCCCATAGTGGCCTTCCTCCCGTGATTGAAGCTTCTACTGCATTGTATTATTTGTTGTCTCAAGTAGATTCATCTCTTCATAGCCATCTTTTTGATCTTGGAGTTGAACCCCAGTACTTTTCTCTTCGATGGCTGCGAGTTTTATTTGGACGAGAATTTTCACTTGACAACCTTTTGATCATCTGGGATGAGATATTTGCATCCGAGAATAACAGCAATGGAAAAGGTTCTGATGACTGTGAGTTCAGAATCTTAAGTTCACCCCGTGGAGCATTTATCTCAGCTATGGCAGTAGCAATGTTACTTCATTTGAGATCTTCACTGCTTGCAACCGAAAACCCTACAAGGTGTCTCCAGAGATTATTAAACTTCCCTGAAGACATTAATATCCAAAAACTACTGGAGAAGGCCAGATCCTTGCAGGCTCTTGCTCTAGGTGTTGATATTTCATCCTCGTCACTTTTGTATATCGGCTTCCATTACCAAAGTAAATCGAAGTATAGTAGATCTGTGACCCTTCCATCTGAATCTCTATCTCCGAAAACTCCTCTGGGTTTGGAACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGCCCAGAAGGCTGAAGAACACAGGCAAGATGGTCTAGAAAAACAGGTTCCCACTCGGAAAAAGGGATGGACAGAAAAAGTAAAATTCAGTTTGAGAAGAGCAGAATCTGGCCCTCCTAGGTCAAGAGTTCAGAGTGGAAAAAATTTTAGGCGCAGTTTGTTGCAAGATCTGCGCAAGGCACTTGGCTCAGATGATGATGCGGAGAAAATGCAGCCAGATGAAACCATATGCCAGAATGAGAATCCTTCTGAAGCAGTTCAAGTACAAGAAGACAGTAGCTGCAATGGTGACAACAATTACTCATCTGACGATAGATCTCCAGGTGTACCTTTTGGCAGTGAGGAAGACTTGTCTATATATTCTGACCCAACTAGCCCCCCTAATGAGGCCAATGATCATGAAATAATCTCAGGGAAAACTAGTGTTGCATCTAATTCATCCCTGGACGAACGCTATGAAACATCAGGTATTAGTTCGCCATTGCCAATGCCATATCCTCTTGAGAACATTTCTCAGACATCATTCTGCAATACAGGAATTTCTGAATGCAATGAAACTTCTGATAGCAGTCCCAATGATCCACCCCGTCCAATCTCTGATCTTCCTGAGAACATTTCTCAGACATCAATCTGCAATACACGAAATTCTGAACACAATGATTCACCCCTTCCCATCTCTTATTCTCCTAAGAACATTTATCAGACTTCATTCTTTGATACACAAAATTCTGAATGCAATGAAGCTTCAAATACCAGTCCCAATGATCCACCACTAACCTCAGGGTGCAACAACAGTAATGCTGAAAATAAAGCCACACCTCCTAAAGAGAAAAAGCATAGTAAGTTGCAGTGGCTTTGGCCCTTTGGACGGAATACTGTTGAGGCTGTATCTGAGAAAGCTAGTGGTAGCACTCAAAATAATGCTCCACAAGCCACCTCATCCACAACTAATGACCATGGTGGTTGTTCTGTTAGCTCCAGAGGAGAATCGGTGGACCAGAATGTTATGGGCACTCTGAAGAATATTGGGCAGTCTATGCTTGACCATATTCAGGTAATTGAATCTGTTTTCCAACAAGACCGCAAAGGCCAGGTTACTGCCATGACAGCTCTCAAAGAGCTTCGGAAAATTAGCAATCTTTTGTCAGAGATGTAG 2649 0.4315 MPPALSDPLSAITATSDAVLKPSKPSAPENRRFRDLRGLQWRINLGVLPCSTSTSIDDFRRVTANCRRRYASLRRRLLVEPHVPKNGTNSANLVIDNPLSLNPDSTWSRFFRNAELEKMVDQDLSRLYPEHGSYFQAPGCQSMLRRILLLWCLRHPECGYRQGMHELLAPLLYVLQADLERLSEVRKLYEDHFTDRFDGLLGQENDLSYSFEFRKSRELMEDGFDSHGNSVKVNSLDELDPEIQTIVLLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMNGAHGSVAMADFFSSSPISGSHSGLPPVIEASTALYYLLSQVDSSLHSHLFDLGVEPQYFSLRWLRVLFGREFSLDNLLIIWDEIFASENNSNGKGSDDCEFRILSSPRGAFISAMAVAMLLHLRSSLLATENPTRCLQRLLNFPEDINIQKLLEKARSLQALALGVDISSSSLLYIGFHYQSKSKYSRSVTLPSESLSPKTPLGLEPDSYWEEKWRVAQKAEEHRQDGLEKQVPTRKKGWTEKVKFSLRRAESGPPRSRVQSGKNFRRSLLQDLRKALGSDDDAEKMQPDETICQNENPSEAVQVQEDSSCNGDNNYSSDDRSPGVPFGSEEDLSIYSDPTSPPNEANDHEIISGKTSVASNSSLDERYETSGISSPLPMPYPLENISQTSFCNTGISECNETSDSSPNDPPRPISDLPENISQTSICNTRNSEHNDSPLPISYSPKNIYQTSFFDTQNSECNEASNTSPNDPPLTSGCNNSNAENKATPPKEKKHSKLQWLWPFGRNTVEAVSEKASGSTQNNAPQATSSTTNDHGGCSVSSRGESVDQNVMGTLKNIGQSMLDHIQVIESVFQQDRKGQVTAMTALKELRKISNLLSEM 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00345 882 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 105 286 - -
Viun9g00345 882 MobiDBLite consensus disorder prediction 741 782 - -
Viun9g00345 882 MobiDBLite consensus disorder prediction 560 702 - -
Viun9g00345 882 ProSiteProfiles TBC/rab GAP domain profile. 31 369 IPR000195 -
Viun9g00345 882 MobiDBLite consensus disorder prediction 616 652 - -
Viun9g00345 882 Gene3D - 308 445 - -
Viun9g00345 882 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 34 437 - -
Viun9g00345 882 FunFam TBC1 domain family member 5 308 449 - -
Viun9g00345 882 MobiDBLite consensus disorder prediction 663 692 - -
Viun9g00345 882 MobiDBLite consensus disorder prediction 572 604 - -
Viun9g00345 882 Pfam Rab-GTPase-TBC domain 117 178 IPR000195 -
Viun9g00345 882 Pfam Rab-GTPase-TBC domain 268 369 IPR000195 -
Viun9g00345 882 MobiDBLite consensus disorder prediction 794 827 - -
Viun9g00345 882 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 35 329 IPR035969 -
Viun9g00345 882 SMART tbc_4 28 412 IPR000195 -
Viun9g00345 882 MobiDBLite consensus disorder prediction 741 768 - -
Viun9g00345 882 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 305 441 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00345 Viun-Chr9 2377866 2382609 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00345 K18469 - gmx:100782008 1398.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00345 9 2377866 2382609 Viun9g00345 9 2377866 2382609 ECH
Viun3g05288 3 59328179 59333829 Viun9g00345 9 2377866 2382609 PCT