Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05288 ATGCCACCGGCTGTGATGGATCCACCATTGCTAGAATCATCGTCGGTGCTGTCTTTTTCCTCTGACATCGTCTTTCCAGGAACGGAGCCAGATAATCGGCGATTCGGGGATCTTAGAGGTCTGCAGTGGCGTATAAATCTTGGGGTATTGCCATCTTCTTCCATTGATGATCTTCGTCGTGCCACAGCTAATTCTAGAAGGAGGTATGCCAGTTTGAGAGGGCGCCTTTTGGTTGATCCTCATATTGTAAAGGATGAAAGTAATTCGCCCAATCTTGTCATGGATAACCCACTTTCACAAAATCCAGACAGTACATGGAGTCGCTTTTTTCGCAATGCAGAGATAGAGAAGATGATTGATCAGGATTTGTCACGTTTATACCCAGAACATGGCAACTATTTCCAGACGCCAGGATGCCAAGGCATATTGAGACGAATTTTATTACTATGGTGTCACAGACACCCAGAGTGTGGTTACAGACAAGGAATGCACGAATTACTTGCTCCGGTGCTTTACGTACTTCAATATGATGTGGAGTGTCTTTCAGAAGTTCGAAAGCTGTATGAAGATCACTTCACAGACAGATTTGATGACCTCCTTTGTCAAGAGAATGATCTTTCTTATAACTTTGATTTAAGAAAATCTTCAGACTCGAAGGAGGATGGAATTGACTCCAATGGAAATGCAATGAAAATCAAGAGTCTTGATGAGCTTGACCCTAAGATACAGAACATTGTGTTGCTAAGTGACGCTTATGGGGCAGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATCGAACATGATGCTTATTGTATGTTTGATGCTTTGATGAATGGGGCTCGTGGTTCAATTGCAATGATTGATTTCTTCTCTTACTCCCCTTTGCCCGGGTCCCATACTGGCTTGCCTCCTGTAATTGAAGCTTCCGCTGCATTGTATCATTTGTTGTCTCATGTGGATTCATCTCTGCATGCCCATCTTGTTGATCTTGGCGTTGAACCCCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGCCGAGAATTTTCACTCAGCAACCTTTTAATAATCTGGGATGAAATCTTTTTATCAGATAATAGTAAAGTGGAAACACATGCCGAGGACAATTTTAGGATCTTCAATTCGTCTCGAGGAGCATTTATCTCTGCTATGGCTGTAGCAATGATGCTTCATTTAAGATCTTCACTTCTTGCCGCAGAAAATCCTACAACCTGTCTTCAGAGATTATTAAACTTCCCTGAGAACACGGATATTGAAAAACTAATAGAGAAGGCTAAATCCTTGAAGGCTCTTGCATTAAGTACTGAGATTTCATCATCGTCGATGCCTTCATTCGTCGAGTATCATAACCAGGCTAAAGCAGTTATTGCAAGATCTAACACCCTTTCATCTGAATCAATCTCTCCGAAAACTCCTATGAATCTGGTACCTGAGAGCTACTGGGAAAAAAAGTGGAGAGTTGTCCACAAGGCTGAAGAACTCAAACAGGATGGGGTGGAAAAACAGGTTCCAACTCGGAAGAAGGGATGGACAGAAAAGGTAAAGTTCAGTTTGAGAAGAACAGAATCTGACCCCTCTTCACCCAGGTCTAGGAGTGGTAAAAAGGAATCCAAGTCACCAATTAGGCGCAGTTTGTTAGAAGATCTATCTAAGGAACTTGGCTTTGAGGAAGATACCGAAAAGCTCAACAGTAATGATAATCTACCTGCAACAGTTGAAGAGGAGCAACGGGAAGACGGTTCAGAATGCAGCAACTGTAGTTCTCCTGCAGATAGATGTCTTAGTCAAAACACAAGTAGTGTGGAAAACTCACCTGCTATGTCTTGCTCAGCTAGCCCTCCTAACGAGGCCAATGATCACAAAAATGACTGTGAGAAGAGTAGTGTCGGATCTAGTTTATCCCTTGATGGAATTAGTGAAGCATCAATTAGTAGTCCTCCCTTTGACTCTCATCTTCCAATCTCTGATCATCCTGAGAACGCATCAAACACAACAGGGAGAAATAATACTAATTCTGCTGGAAATTCAACCACGCATTCCAAGGAGAGAAAATTGAACAAATTTCAGTGGCTATGGAAGCTTGGGCGGAATAATGGCGAGTTTACTTTAGAGAAAGGAAGTTATGCTTCTGAGGCAGTAAAACCTGCCAACAGTTGTGATGATCAAAGCAACACAGTACCCTCTTCTACAGCCAATACGCATTGTAGTCCTCTTGGTTGCAAAGGGGATTCTACAGAGCAGGATATGATGGACACTATGAGGAATATTGGGCAGTCAATGCTTGAGCATATCCAGGTGATAGAGAAAGCTTTCCAACAGTGGGGAGAGGGAGCATCATTGGATAGCATGTCTGAAAATGTTGCGGTTGGTGAAGAGCAGGTTTCTCCCATGTCAGCTCTGAAGGAGCTACGTAAAATCAGCAATCTTTTGTCTGAGATATGA 2472 0.4272 MPPAVMDPPLLESSSVLSFSSDIVFPGTEPDNRRFGDLRGLQWRINLGVLPSSSIDDLRRATANSRRRYASLRGRLLVDPHIVKDESNSPNLVMDNPLSQNPDSTWSRFFRNAEIEKMIDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCHRHPECGYRQGMHELLAPVLYVLQYDVECLSEVRKLYEDHFTDRFDDLLCQENDLSYNFDLRKSSDSKEDGIDSNGNAMKIKSLDELDPKIQNIVLLSDAYGAEGELGIVLSEKFIEHDAYCMFDALMNGARGSIAMIDFFSYSPLPGSHTGLPPVIEASAALYHLLSHVDSSLHAHLVDLGVEPQYFALRWLRVLFGREFSLSNLLIIWDEIFLSDNSKVETHAEDNFRIFNSSRGAFISAMAVAMMLHLRSSLLAAENPTTCLQRLLNFPENTDIEKLIEKAKSLKALALSTEISSSSMPSFVEYHNQAKAVIARSNTLSSESISPKTPMNLVPESYWEKKWRVVHKAEELKQDGVEKQVPTRKKGWTEKVKFSLRRTESDPSSPRSRSGKKESKSPIRRSLLEDLSKELGFEEDTEKLNSNDNLPATVEEEQREDGSECSNCSSPADRCLSQNTSSVENSPAMSCSASPPNEANDHKNDCEKSSVGSSLSLDGISEASISSPPFDSHLPISDHPENASNTTGRNNTNSAGNSTTHSKERKLNKFQWLWKLGRNNGEFTLEKGSYASEAVKPANSCDDQSNTVPSSTANTHCSPLGCKGDSTEQDMMDTMRNIGQSMLEHIQVIEKAFQQWGEGASLDSMSENVAVGEEQVSPMSALKELRKISNLLSEI 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05288 823 ProSiteProfiles TBC/rab GAP domain profile. 33 368 IPR000195 -
Viun3g05288 823 Pfam Rab-GTPase-TBC domain 268 369 IPR000195 -
Viun3g05288 823 Pfam Rab-GTPase-TBC domain 114 197 IPR000195 -
Viun3g05288 823 MobiDBLite consensus disorder prediction 637 659 - -
Viun3g05288 823 FunFam TBC1 domain family member 5 307 447 - -
Viun3g05288 823 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 34 437 - -
Viun3g05288 823 MobiDBLite consensus disorder prediction 508 692 - -
Viun3g05288 823 Gene3D - 307 447 - -
Viun3g05288 823 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 303 439 IPR035969 -
Viun3g05288 823 MobiDBLite consensus disorder prediction 592 627 - -
Viun3g05288 823 MobiDBLite consensus disorder prediction 666 689 - -
Viun3g05288 823 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 328 IPR035969 -
Viun3g05288 823 SMART tbc_4 30 410 IPR000195 -
Viun3g05288 823 MobiDBLite consensus disorder prediction 508 573 - -
Viun3g05288 823 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 99 284 - -
Viun3g05288 823 FunFam TBC1 domain family member 5 98 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05288 Viun-Chr3 59328179 59333829 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05288 K18469 - gmx:100816501 1310.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05288 3 59328179 59333829 Viun3g05288 3 59328179 59333829 ECH
Viun3g05288 3 59328179 59333829 Viun9g00345 9 2377866 2382609 PCT