Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00324 ATGGCAACTGAGAGTCCAATTAGAATCTCCGAAGCTGGGGGTAAATGGCCATCACATAAGGAAGCTACAGCTTTCGGTTCAACATCTCGCAACATGGCAACAGAGGATTTGGGTATACTTTTGAATGGCCATAGGTTCCATGGTGGGAGAAAGGATGTGACACCAAACCGCAGTGGCAGTGCACCTCCCAGCATGGAAGGCTCGTTTTTGGCCATAGAAAACCTCTTACCCCAGCAGATCATCACCCAGAATGCAAGCTTTGCAGCTCTAAGCAGTGCCATGCAAAATTGCGAGTCTGAAGAACAATTACGAGCAGATCCAGCTTATTTGGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCACTTACATCCTGGGAAAACCGCCATTTAGGACATCATATTGGCAGTTTTAGAAATAATTGGAGAATGTCTGCTGCTGATGATAGTGATAAAAGTTCTTTAGATTTGCCTCAAAGGACTCTTTCCACACACAAGGAGGAGTCGGAAGATGAATCACACCAACAGCCATATGATGACGAATTGATTAAGGCGAGCGGATTGTGGCGTAGACCTGATGCGGCTTCATTGGCATCTCAACCTAAAAACGTTGTTGATTTAATTCAGGAGGATTTTCCTCGCACCATGTCACCTGTATATAGTAAGTCTCTTTCCGAAAGTCCTGGACTGGTGGATAAACCAATTGACTTAGAAGTCGGTTCTAGTTCTTCTCATGATCCCCCTGTTACTACAGTAGAAGCTGCTAAACCTACTGTAGGTGCGGATAGCATAAGGGTGTCATCAATTGTTGATACCCATGCCCCTGTTGCAAGCTCATCATCTCTTGAATCCACTGGTAGCATTGGTGTTAATGACTTAGACGTTGCATCTGTTGCATCTCAACTGAAGGCTCTTGGTGTATCTAATCTACCACACTCAGAAAGTCTGAGTTACGAAGAAAAGTGGAAGACTAGCTACCAGAACAATTTGATGCAACGCCCAGGATTCCAGCAACAAAACAATGCATCTGATATTCCTAGCGCCAATTCTCAAAATGTAAATTCTGTGTATATTGGTAGGGAACAGTTTCCTTTTAATTCAAGCAAGTTCTCCAATGTCCAGCCACTACTGCAGTCGTCTGGGTTTACACCTCCCCTATATGCCACAGCAGCTGCTTATATGAACTCAGCAAATCCATTTTACACAAATATGCAGGCCCCAGGTATGTATACTCCACAATATGTTGGTGGATACACTGTAAATCCGACAGCTTTTCCTCCATATGTTACTGCATACCCTCCTCATGGTGCTGTACCGTTTGTTGTTGATGGAGCTACTAGTTCTAGTTATACTCCACTAACACCTGGGGTTTCAACTGGGGGAAACATTTCACATGGAACTGAAATGGTACAGGCAAACAAGTACCTTGGGCAATTTGGATTTCCTGTGCAGCCTTCTTTTGGTGATCCCATGTACATGCAATATCAGCAGCAGCCTTTTGTGGAGGGATATAGTATTTCTGGTCATTTTGACCCAATGACACCTAGAGCAAGTAGTGTTAACCAAATTAGCCCTTATGATTCACAAAAAAGGCCCAGTACAGGTACTTATTTGGATGATAAAAAATTACCTGATCAGAGATCTGCTACTAATATGAACTCAAGAAGAGGTGGATTATTGATTCCTAGTTATTTTGGACACATGCCAAATATGGGTTTTTTAATGCAGTATCCAAGTTCACCACTTCCAAGCCCAGTTTTATCTGGATACCCAGAAGGAAGTCCAGGCCATCTAGGTGGTAATAATGAAATAAAACTATCCCCAGCTTCTGGTAGAAATGGAGGCATAATATCTGAATGGCAAGGTCAGAGATCATTTGATGGTGGTCATGACCCCAAAATTGTTAATTTTCTTGAAGACTTAAAATCTGGCAAAGGTCGAAGGTTTGAGCTATCTGATATTATTGGACATATTGTTGAATTTAGCTCTGATCAGCATGGGAGTCGATTTATACAGCAGAAGTTGGAAAGTTGTAGTGTTGAAGAGAAGACATTGGTGTTTAAGGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTATTTGGTAACTACGTGATACAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAGGGAACTTGCAGATCGGCTGGTTGGCCAGATACTACCTCTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTTCGTGACCAAAACGGTAACCATGTAATTCAAAAATGCATCGAATCGATTCCAACCAAAAAAATTAGTTTTATACTATCTGCATTTTGTGGTCAAGTTGCTATTCTATCAATGCATCCCTATGGATGTCGAGTCATACAGAGAGTACTAGAACATTGCACAGACGAGAGTCAGTGTCAGTTTATTGTTGATGAAATCTTGGAGTCAGTTTGTGATCTTGCTCAGGACCAGTATGGCAATTATGTTACACAGCATGTCTTGGAGAGAGGAAAGCCTCAAGAAAGGAGCCAAATTATCAGCAAGTTGTCAGGACATATTGTTGAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTAGAAAAATGTTTGGAGTATGGTGATGCCACCGAACGGGAGATGCTAATTGCAGAGATATTTGGGCATGGTGAACAAAGTGATAATTTATTGATAATGATGAAAGATCAATTTGCTAATTATGTGGTCCAGAAGGTCATTGATATCTGTTCTGAAAAACAGCAAGCGATGTTACTTTCTCAAGTAAGAATTCATGCACATGCTTTGAAGAAATACACATATGGGAAACACATTGTGGCTCGGTTGGAACATCAATTTGGAGAGAATCAAACACCAGGCTCATGA 2958 0.4162 MATESPIRISEAGGKWPSHKEATAFGSTSRNMATEDLGILLNGHRFHGGRKDVTPNRSGSAPPSMEGSFLAIENLLPQQIITQNASFAALSSAMQNCESEEQLRADPAYLAYYSSNVNLNPRLPPPLTSWENRHLGHHIGSFRNNWRMSAADDSDKSSLDLPQRTLSTHKEESEDESHQQPYDDELIKASGLWRRPDAASLASQPKNVVDLIQEDFPRTMSPVYSKSLSESPGLVDKPIDLEVGSSSSHDPPVTTVEAAKPTVGADSIRVSSIVDTHAPVASSSSLESTGSIGVNDLDVASVASQLKALGVSNLPHSESLSYEEKWKTSYQNNLMQRPGFQQQNNASDIPSANSQNVNSVYIGREQFPFNSSKFSNVQPLLQSSGFTPPLYATAAAYMNSANPFYTNMQAPGMYTPQYVGGYTVNPTAFPPYVTAYPPHGAVPFVVDGATSSSYTPLTPGVSTGGNISHGTEMVQANKYLGQFGFPVQPSFGDPMYMQYQQQPFVEGYSISGHFDPMTPRASSVNQISPYDSQKRPSTGTYLDDKKLPDQRSATNMNSRRGGLLIPSYFGHMPNMGFLMQYPSSPLPSPVLSGYPEGSPGHLGGNNEIKLSPASGRNGGIISEWQGQRSFDGGHDPKIVNFLEDLKSGKGRRFELSDIIGHIVEFSSDQHGSRFIQQKLESCSVEEKTLVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRRELADRLVGQILPLSLQMYGCRVIQKALEVIELEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKKISFILSAFCGQVAILSMHPYGCRVIQRVLEHCTDESQCQFIVDEILESVCDLAQDQYGNYVTQHVLERGKPQERSQIISKLSGHIVELSQHKFASNVVEKCLEYGDATEREMLIAEIFGHGEQSDNLLIMMKDQFANYVVQKVIDICSEKQQAMLLSQVRIHAHALKKYTYGKHIVARLEHQFGENQTPGS 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00324 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 838 873 IPR001313 GO:0003723
Viun9g00324 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 765 800 IPR001313 GO:0003723
Viun9g00324 985 MobiDBLite consensus disorder prediction 519 537 - -
Viun9g00324 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 657 692 IPR001313 GO:0003723
Viun9g00324 985 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 637 977 IPR033133 GO:0003723
Viun9g00324 985 MobiDBLite consensus disorder prediction 1 29 - -
Viun9g00324 985 FunFam Pumilio homolog 1 isoform 2 636 983 - -
Viun9g00324 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 801 837 IPR001313 GO:0003723
Viun9g00324 985 CDD Pumilio 652 973 IPR033712 GO:0003723
Viun9g00324 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 729 764 IPR001313 GO:0003723
Viun9g00324 985 SMART pum_5 801 837 IPR001313 GO:0003723
Viun9g00324 985 SMART pum_5 657 692 IPR001313 GO:0003723
Viun9g00324 985 SMART pum_5 729 764 IPR001313 GO:0003723
Viun9g00324 985 SMART pum_5 838 873 IPR001313 GO:0003723
Viun9g00324 985 SMART pum_5 765 800 IPR001313 GO:0003723
Viun9g00324 985 SMART pum_5 874 909 IPR001313 GO:0003723
Viun9g00324 985 SMART pum_5 916 951 IPR001313 GO:0003723
Viun9g00324 985 SMART pum_5 693 728 IPR001313 GO:0003723
Viun9g00324 985 SUPERFAMILY ARM repeat 641 974 IPR016024 -
Viun9g00324 985 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 109 975 - -
Viun9g00324 985 MobiDBLite consensus disorder prediction 519 558 - -
Viun9g00324 985 Gene3D - 638 982 IPR011989 -
Viun9g00324 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 874 909 IPR001313 GO:0003723
Viun9g00324 985 Pfam Nucleic acid binding protein NABP 304 656 IPR012940 -
Viun9g00324 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 693 728 IPR001313 GO:0003723
Viun9g00324 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 916 951 IPR001313 GO:0003723
Viun9g00324 985 Pfam Pumilio-family RNA binding repeat 776 799 IPR001313 GO:0003723
Viun9g00324 985 Pfam Pumilio-family RNA binding repeat 878 911 IPR001313 GO:0003723
Viun9g00324 985 Pfam Pumilio-family RNA binding repeat 661 695 IPR001313 GO:0003723
Viun9g00324 985 Pfam Pumilio-family RNA binding repeat 805 840 IPR001313 GO:0003723
Viun9g00324 985 Pfam Pumilio-family RNA binding repeat 843 875 IPR001313 GO:0003723
Viun9g00324 985 Pfam Pumilio-family RNA binding repeat 698 729 IPR001313 GO:0003723
Viun9g00324 985 Pfam Pumilio-family RNA binding repeat 922 952 IPR001313 GO:0003723
Viun9g00324 985 Pfam Pumilio-family RNA binding repeat 733 766 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00324 Viun-Chr9 2168492 2177291 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00324 K17943 - gmx:100811036 1753.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05265 3 59171173 59180435 Viun9g00324 9 2168492 2177291 PCT