Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05265 ATGGCAACTGAGAGTCCAATCAGGATCTCTGAAGCTGGGGGGAAATGGCCGACTCTTAAGGAAGCTGCAACGTTTGGTTCACCATCCCATCATATGGCAACAGAGGATCTGGGTATATTTTTGAATGGTCATAGGTTCCACGGCAGTGGAAAAGATGTGGTACCCAATCGTAGTGGCAGTGCACCTCCAAGCATGGAAGGCTCATTTCATGCCATAGAGAACTTATTATCCCAAAACACCACTAGAAATGCAAGCTTGGGATCTCTCAACAGAGCTGTGCAAAAATATGATAGCGGTAAAGGGTCCTTTCATTTGTCACGAGAAACTCTTGCAACACACAAGGAGGAAGCTGAGGATGATTCAACCCAACAACTGTATGATAATGAGTTAGATAAGGCTAGTGGAAAATGGCATCGGCAGGATGTGGCTTCAACATCATCTAAGCACAAAAAAATTGTACTGGAAGATCTTCCGCATGCCATGTCACCTGTACATAATAAGTCTCTTGGAGTGGTGGATGAACTAATTGATGTAGATACTGGTTCAAATTCTTCTTATGACCCTTCTATCTCTACAGTGGATGCTATAAAACCTACCATAGGTGGAGATGATACAAGGGTATCATCATTTGTTGATTACTCTGCCCCTGTCACAAGCTCATCATCTCTCAATTCCACTGGAAGCATGGGTTTTAATGATTTAGATGTTACAGTTGTAGAATCTCAATTGAGGGCTCTCACTGTATCTAATCTACCAAATTCAGAAAGTCAGAGTTATGAAGATAAATGGAAGAACAGCTTACAGAATAGTTTGACGCAGCAACGCCACCAACAAAGCTATCCATGTGAAACTCCTAGCAATTCTCAAAGTGAAAAATGTGCATATATTGGTATGGAGCAGCCTCTTCAGAGTTCAAGCAAGTTCTCATCTGATGTCCAGCCTGTATTATCTGTGCTGCAATCATCGGGGTATACACCTCCACTATATGCTACAGCAGCAGCTTATATGACCTCAACAAATCCTTTTTACACTAATTTTCAGGCTTCAGGTATATATTCTCCATCATATGTAGGTGCATATCCTTTTAGTCCCACAGCTGTTCCTCCATATATCGCTGCATACCCTCCTCATGGTTCTGTACCACTTGTTGATGGGGCTACTGGTTCTAGTTTTACTCCCCAAGCAGCAGGGGTTTCTTCCATTGTAGGAAGCATTTCACATAGTGCTGAAATGATACATGCAAACAAGGTTTTTGGACAATTTGGATTTCCTCCGCAGCCTTCTTTTGGTGAGCCTTTTTACATGCAATATCATCAACAACCTTTTATGGAAGGATACAATATACCTGGTCATCTGCTGGCACCTAGAGCCAGTGTTGGTGGCCAAATTGGTCCTTTTGATTCCCAAAAGAGGCCCAATAGTGGTTCTTACTTGGATGAGAAAAAATTACATAATCAGAGAAGTGGTGCTAATTTGAATTCTAATAGAGGTGGGATAATGCATCCTGGTTACTTTGGACACCATTCAAACATGGCTTTCGCAACTCAGTATCCAAGTTCTCCACTTTCTAGACCCGTCTTGTCTGGATACCCTGAAAGTAGTTCTGGCCTTCCAGGTGGAAGGAATGAAAGGAGACCCTCTCCAGCTTCTGGCAGAAACGGAGGTTTATTATCTGGATGGCAAAGTCAAAGAGCCTTAGACAGTGGTCACAACCCAAAAATTGCAATTTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGACATTATTGGACACATAGTTGAATTTAGCACTGATCAACATGGGAGTCGTTTTATACAGCAGAAGTTGGAAAACTGTGGCGTTGAAGAGAAGGAGTTAGTGTTCAAAGAGGTTCTTCCACATACTTCTAAATTAATGACTGATGTATTTGGCAATTACGTAATTCAAAAGTTTTTTGAGTACGGAAGCCCTGAGCAGAGGAAGGAACTTGCAAATTGTCTTCTTGGTCAGATACTGCCTTTAAGTCTTCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATCAATCTTGAACAGAAAGTTCAGCTTGTTCATGAACTAGATGGAAATGTCATGAGATGTGTCCGTGACCAAAATGGTAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACTAAAAGCATTGACTTTATAATATCTGCGTTTCGTGGTCAAGTTGCTATTCTATCAATGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTTTAGAGCATTGTTCAGACGAGGTTCAATGTCAGTTCATTGTGGATGAAATCTTGCAGTCAGTTTTTACTCTTGCTCAGGACCAGTATGGTAATTATGTTGCTCAGCATGTGTTGGAGAGAGGAAGGCCTCAGGAAAGGAGCCAAATTATTAGCAAGCTTTCAGGACATATTGTTCAATTAAGCCAACATAAATTTGCATCAAATGTTGTTGAGAAATGCTTGGAATATGGTGATTCCACTGAACGACAGCTGTTAATAACTGAGATTATTGGACATGACAAACAACATGATAATTTGTTGACAATGATGAAAGATCAATTTGCAAATTATGTGATCCAGAGGGTTCTTGAGATCTGTTCTGAAAGTCAAAGAGCAGTGTTACTTTCTCGCATAAGGCTTCATGCTCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTGTGAACAGCTACTTGAGGAAGGAGATAGATGA 2757 0.4091 MATESPIRISEAGGKWPTLKEAATFGSPSHHMATEDLGIFLNGHRFHGSGKDVVPNRSGSAPPSMEGSFHAIENLLSQNTTRNASLGSLNRAVQKYDSGKGSFHLSRETLATHKEEAEDDSTQQLYDNELDKASGKWHRQDVASTSSKHKKIVLEDLPHAMSPVHNKSLGVVDELIDVDTGSNSSYDPSISTVDAIKPTIGGDDTRVSSFVDYSAPVTSSSSLNSTGSMGFNDLDVTVVESQLRALTVSNLPNSESQSYEDKWKNSLQNSLTQQRHQQSYPCETPSNSQSEKCAYIGMEQPLQSSSKFSSDVQPVLSVLQSSGYTPPLYATAAAYMTSTNPFYTNFQASGIYSPSYVGAYPFSPTAVPPYIAAYPPHGSVPLVDGATGSSFTPQAAGVSSIVGSISHSAEMIHANKVFGQFGFPPQPSFGEPFYMQYHQQPFMEGYNIPGHLLAPRASVGGQIGPFDSQKRPNSGSYLDEKKLHNQRSGANLNSNRGGIMHPGYFGHHSNMAFATQYPSSPLSRPVLSGYPESSSGLPGGRNERRPSPASGRNGGLLSGWQSQRALDSGHNPKIAIFLEELKSGKGRRFELSDIIGHIVEFSTDQHGSRFIQQKLENCGVEEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKELANCLLGQILPLSLQMYGCRVIQKALEVINLEQKVQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKSIDFIISAFRGQVAILSMHPYGCRVIQRVLEHCSDEVQCQFIVDEILQSVFTLAQDQYGNYVAQHVLERGRPQERSQIISKLSGHIVQLSQHKFASNVVEKCLEYGDSTERQLLITEIIGHDKQHDNLLTMMKDQFANYVIQRVLEICSESQRAVLLSRIRLHAHALKKYTYGKHIVARCEQLLEEGDR 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05265 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 593 628 IPR001313 GO:0003723
Viun3g05265 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 846 887 IPR001313 GO:0003723
Viun3g05265 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 629 664 IPR001313 GO:0003723
Viun3g05265 918 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 573 913 IPR033133 GO:0003723
Viun3g05265 918 Pfam Pumilio-family RNA binding repeat 669 702 IPR001313 GO:0003723
Viun3g05265 918 Pfam Pumilio-family RNA binding repeat 636 663 IPR001313 GO:0003723
Viun3g05265 918 Pfam Pumilio-family RNA binding repeat 597 631 IPR001313 GO:0003723
Viun3g05265 918 Pfam Pumilio-family RNA binding repeat 712 736 IPR001313 GO:0003723
Viun3g05265 918 Pfam Pumilio-family RNA binding repeat 856 889 IPR001313 GO:0003723
Viun3g05265 918 Pfam Pumilio-family RNA binding repeat 814 848 IPR001313 GO:0003723
Viun3g05265 918 Pfam Pumilio-family RNA binding repeat 779 811 IPR001313 GO:0003723
Viun3g05265 918 Pfam Pumilio-family RNA binding repeat 741 776 IPR001313 GO:0003723
Viun3g05265 918 CDD Pumilio 588 909 IPR033712 GO:0003723
Viun3g05265 918 SMART pum_5 701 736 IPR001313 GO:0003723
Viun3g05265 918 SMART pum_5 665 700 IPR001313 GO:0003723
Viun3g05265 918 SMART pum_5 852 887 IPR001313 GO:0003723
Viun3g05265 918 SMART pum_5 737 773 IPR001313 GO:0003723
Viun3g05265 918 SMART pum_5 774 809 IPR001313 GO:0003723
Viun3g05265 918 SMART pum_5 810 845 IPR001313 GO:0003723
Viun3g05265 918 SMART pum_5 629 664 IPR001313 GO:0003723
Viun3g05265 918 SMART pum_5 593 628 IPR001313 GO:0003723
Viun3g05265 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 737 773 IPR001313 GO:0003723
Viun3g05265 918 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 229 911 - -
Viun3g05265 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 810 845 IPR001313 GO:0003723
Viun3g05265 918 MobiDBLite consensus disorder prediction 524 563 - -
Viun3g05265 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 665 700 IPR001313 GO:0003723
Viun3g05265 918 MobiDBLite consensus disorder prediction 462 496 - -
Viun3g05265 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 774 809 IPR001313 GO:0003723
Viun3g05265 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 701 736 IPR001313 GO:0003723
Viun3g05265 918 SUPERFAMILY ARM repeat 588 910 IPR016024 -
Viun3g05265 918 Gene3D - 575 916 IPR011989 -
Viun3g05265 918 MobiDBLite consensus disorder prediction 267 286 - -
Viun3g05265 918 FunFam Pumilio homolog 1 isoform 2 573 917 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05265 Viun-Chr3 59171173 59180435 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05265 K17943 - gmx:100819166 1449.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05265 3 59171173 59180435 Viun9g00324 9 2168492 2177291 PCT