Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00134 ATGGCGATGACAGAGAGAGTAGGTGTTCTAATTATGTACTTTGCACTGGTTTATCATGTGGGTGCTGCGCAAAAAGTAATGCCAGTTGCAGGTCCTGATATCTTCAAGAATAAAAACACAGCTCTGGATAAACTTCTTCCAGGGGAAAAGATAAACAATGTCATAAGCTTCGGGGCCAAACCTGATGGCAAGTTTGACTGCACTCAGGCTTTCATGGATGCATGGCAAGCAACTTGCCACTCCAAAGTGCAAGCGAGGTTTCTGGTTCCAGAAGGAACATTTTTGGTTTCTTCCATGTTTTTCGCAGGTCCATGTTCCACTCCAGAGCCCGTAACAATCCAGGTTGTAGGCACTATTGTGGCTACAACAGATCTCAGTGAATACGAGAATAACGAATGGCTTCTGTTTGAGGACATGGACGGTATAAAACTCATTGGTGGTGGTACCTTTGACGGTGTCGGAAAGAAATCATGGAAAACGGCTTCCAACTGTAAAGAAAAACCCCACGTAGCATGTGTCAGAAACCCTTCTAGTATATATTTCCACAGAATTAAGAATGGAATTATACAGAACATTAAATCCACAAACCCCAAAGGGTTTCACATATTTGTGACTAATTGTGCTAACATCAGACTCCGACGACTTAAACTCACTGCACCAGATGAAAGCCCCAACACCGATGGAATTCATATCAGCCACTCCATCGGTGTTAAAGTAGCCAGAAATACCATTGAAACTGGAGATGATTGTATTTCCATGATACACGGATCCCACCAAGTTTCCATCAACGATGTCAATTGTGGTCCTGGACATGGTATAAGTATAGGTAGTCTGGGAAAGTACGAGGAAGAGTTAGAAGTGAAAGAAATTCGTGTGAAGAACGTGTCGATGGTTGGTACACAGAATGGGTTGAGAATCAAGACATGGCCCGATCTGTATCCTGGTCATGCATCAGATATCAGCTTCAGCGACATCACCATGCAAAACGTTAAGAACCCTATCGTCATTGACCAAGAATATCAATGCTCTTCACAATGCAAGGCTTCGCTTGTAAAGATCAAAGATGTTGTTTTTTCAAATATAAAGGGAACCACTACAACGCCAATTGCAGTGGATTTAAGGTGCAGCAACAAGTTCCCTTGTGAAAGTATTAAACTTGAGAACATAGACTTGTCGCTTAAAACCAAACCTAGTGGATCTAGATGTGCCAACATTAAACCAATTTACAAGGGCTTGCAAAACCCACCAGGTTGTCTATAA 1260 0.4222 MAMTERVGVLIMYFALVYHVGAAQKVMPVAGPDIFKNKNTALDKLLPGEKINNVISFGAKPDGKFDCTQAFMDAWQATCHSKVQARFLVPEGTFLVSSMFFAGPCSTPEPVTIQVVGTIVATTDLSEYENNEWLLFEDMDGIKLIGGGTFDGVGKKSWKTASNCKEKPHVACVRNPSSIYFHRIKNGIIQNIKSTNPKGFHIFVTNCANIRLRRLKLTAPDESPNTDGIHISHSIGVKVARNTIETGDDCISMIHGSHQVSINDVNCGPGHGISIGSLGKYEEELEVKEIRVKNVSMVGTQNGLRIKTWPDLYPGHASDISFSDITMQNVKNPIVIDQEYQCSSQCKASLVKIKDVVFSNIKGTTTTPIAVDLRCSNKFPCESIKLENIDLSLKTKPSGSRCANIKPIYKGLQNPPGCL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00134 419 SUPERFAMILY Pectin lyase-like 49 419 IPR011050 -
Viun9g00134 419 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Viun9g00134 419 Pfam Glycosyl hydrolases family 28 79 406 IPR000743 GO:0004650|GO:0005975
Viun9g00134 419 PANTHER - 51 405 - -
Viun9g00134 419 FunFam Pectin lyase-like superfamily protein 41 416 - -
Viun9g00134 419 Gene3D - 46 416 IPR012334 -
Viun9g00134 419 SMART pbh1 234 277 IPR006626 -
Viun9g00134 419 SMART pbh1 287 308 IPR006626 -
Viun9g00134 419 SMART pbh1 207 233 IPR006626 -
Viun9g00134 419 SMART pbh1 317 338 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00134 Viun-Chr9 831053 833003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00134 51 418 Glycoside Hydrolase AT1G02790 44.327 5.53e-103 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00134 K01213 - gmx:106796220 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00134 9 831053 833003 Viun9g00134 9 831053 833003 ECH
Viun3g05708 3 62593540 62595413 Viun9g00134 9 831053 833003 PCT