Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05708 ATGGCCATTGCAAAGAGCGTTGTTCTTATCTTGCTCTTTGCAGTGGTCTGCAGTGTGGAGGGAGCAGTAAAACGACCTATTGTTGGTCCTGACATGTTCAAGAATAAAAATGTGGCTAAGGATAAGCTACTTCCTGGCGAGCAAATATTTAACGTCATGGATTTTGGAGCCAAAGCTAATGGCAAGTTCGATTGCACCCAGGCGTTCATGGATGCATGGCAAAAGGTGTGCCATACGACGGGGCCAGCGAGGCTTTTTGTTCCTGAAGGCAGATTCCTGATTTCATCGATGTATTTCAGTGGACCATGCACTGCTCAACCTCCAATAACAATTCAAGTAAAAGGGTATGTGATGGCTACCACGGATATTTCCGAGTACGAAAACGGAGACTGGCTCATATTCCAGAAGCACAATGGGTTGAAGATTATTGGCGGGGGAACTTTCGATGGCCAGGGAAAACAGTCCTGGGAATACTCCGAGAAATGCGAATCAGGTGATGACGGTGCTTGCGCCAGGAATCCAAGCAGCCTTTTCTTCAGCGATAGCAGCAACGTGGTTGTACAGGGCATAAGGACTGCGAATCCCAAAGGCTTTCACATATTCGTTACCAAATGTTCAAACATAAGATTGAGAAAACTGAAGCTGGTTGCCCCGGAAACCAGCCCCAACACCGATGGCATTCATGTCAGCCACTCTGACACCGTGATTATGTCCAGAAACACCATTGCAACAGGGGATGATTGCATCTCTATGATACAAGGAGTGAAGAATGTTTTCATCAACAGACTCAAGTGTGGCCCTGGCCACGGTATAAGTATCGGTAGCCTTGGGAAATATGAGGATGAGGACGAGGTGAGAGGCATTCGCATCCAGAATTGCTCATTGATCAACACAACAAATGGTCTGAGAGTGAAAGCATGGCCTGATAGATATCCAGGTGCAGCCTCAGACATTAGCTTCACTAACATTGACATGGAAAATGTGAAGAATCCTATCATCATTGATCAAGAGTATGAATGTGATCCAGACTGCAAAAAGAAGCCATCACTTGTAAGGATCCAAAATGTTCATTTCCAAAATGTGAAAGGAACAACAACTTCACCACTTGCAGTGGACTTAAGGTGCAGCAAGCTGTTTGGGTGCCAGGGTGTTACAGTTAGAGACATTGACCTCAAGTTTGGAGATGCCCCAACAACCGCAAGATGTGTCAATACTCAACCTCTCTTTGCTGGTTTGCTAATGCCCCCACCCTGCGCATAG 1260 0.4611 MAIAKSVVLILLFAVVCSVEGAVKRPIVGPDMFKNKNVAKDKLLPGEQIFNVMDFGAKANGKFDCTQAFMDAWQKVCHTTGPARLFVPEGRFLISSMYFSGPCTAQPPITIQVKGYVMATTDISEYENGDWLIFQKHNGLKIIGGGTFDGQGKQSWEYSEKCESGDDGACARNPSSLFFSDSSNVVVQGIRTANPKGFHIFVTKCSNIRLRKLKLVAPETSPNTDGIHVSHSDTVIMSRNTIATGDDCISMIQGVKNVFINRLKCGPGHGISIGSLGKYEDEDEVRGIRIQNCSLINTTNGLRVKAWPDRYPGAASDISFTNIDMENVKNPIIIDQEYECDPDCKKKPSLVRIQNVHFQNVKGTTTSPLAVDLRCSKLFGCQGVTVRDIDLKFGDAPTTARCVNTQPLFAGLLMPPPCA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05708 419 FunFam Pectin lyase-like superfamily protein 38 416 - -
Viun3g05708 419 SUPERFAMILY Pectin lyase-like 47 418 IPR011050 -
Viun3g05708 419 Gene3D - 39 410 IPR012334 -
Viun3g05708 419 SMART pbh1 315 336 IPR006626 -
Viun3g05708 419 SMART pbh1 232 253 IPR006626 -
Viun3g05708 419 SMART pbh1 182 202 IPR006626 -
Viun3g05708 419 SMART pbh1 205 231 IPR006626 -
Viun3g05708 419 SMART pbh1 285 306 IPR006626 -
Viun3g05708 419 SMART pbh1 348 388 IPR006626 -
Viun3g05708 419 ProSitePatterns Polygalacturonase active site. 262 275 IPR000743 GO:0004650|GO:0005975
Viun3g05708 419 PANTHER - 48 404 - -
Viun3g05708 419 Pfam Glycosyl hydrolases family 28 77 406 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05708 Viun-Chr3 62593540 62595413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05708 49 418 Glycoside Hydrolase AT4G18180 41.495 7.49e-103 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05708 K01213 - gmx:100800324 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05708 3 62593540 62595413 Viun3g05708 3 62593540 62595413 ECH
Viun3g05708 3 62593540 62595413 Viun9g00134 9 831053 833003 PCT