Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00128 ATGTTTGTGGCATTGCTCTTGCTGGTGGCATTGAGCAATGCCGTGAGAGTTAGCGGAGATGGTGGGCAATGTGGTTCCAACCCAACACTAGACCCAAGACCACACAGTGTCTCCATTTTGGAGTTTGGTGCAGTTGGAGATGGTAGAACACTCAACACCATTGCGTTCCAGAACGCCATCTTCTATCTCAAGTCATTTGCCGATAAGGGTGGCGCTCAGCTCTATGTTCCTCCCGGTAAATGGCTCACCGGAAGCTTCAATCTTACCAGCCATCTCACCCTCTTTCTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCATTGGGATGTCATTGAACCCTTGCCTTCTTATGGCCGAGGACTTGAAGTTCCTGGGGGAAGATATCAGAGCTTGATAAATGGATACATGTTACATGATGTGGTTGTAACAGGTAATAATGGAACCATTGACGGCATGGGAATGGTTTGGTGGGAGTGGTATAGCTCCCATTCCTTGAACCATAGCAGGCCTCATCTGGTTGAAATTGTGGCATCTGATAATGTGGTGGTTTCAAATCTTACATTCTTGAATGCCCCAGCTTATAGCATACACCCAGTCTATTGCAGCCATGTACATATTCAAAATGTTTCAATCTCTGCTCCTCCAGAATCCCCTTACACTGTTGGTATAGTGCCAGATTCTTCTGAACATGTGTGTATAGAAGATTGTATTGTTGGCATGGGATTTGATGCAATTTCTCTGAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCAACTGAGAAAGTGCACATCAGAAGGGTGCATCTTCATGCATTTTCTGGCTCTGCTCTTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAGATGTTGTAGTGGAGCATGCTCATGTTTTGAACTCAAACAGTGGCATTGAGTTTAGAACCACCAGAGGAAGAGGTGGTTATATGAAAGATATTGTTATATCAGACATAGAAATGGAGAATGTGCACACAGCAATTGCTGCCACTGGTAATTGTGGTTCTCATCCTGATGACAATTTTGATCCAAATGCACTCCCACTTTTGGATCACATTACATTGAGGGATGTCACAGGTACAAACATTACCATTGCTGGAAACTTTGCAGGAATTGAGGAATCTCCTTTCACAAACATATGCCTCTCCAACATAACCTTGTCAACAGATTCTGTTTCTACCATGACTTGGGAATGCTCAAATGTGTCTGGTTTTTCAGACTCAGTGCTCCCAGAACCTTGTCCTGAACTTGGAAACCCCTCATACGATTCTTCTTCCTCCTGTTTTCTGAGTATCAGTGGAAAAACTGCAGTGCTGTGA 1353 0.4442 MFVALLLLVALSNAVRVSGDGGQCGSNPTLDPRPHSVSILEFGAVGDGRTLNTIAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWDVIEPLPSYGRGLEVPGGRYQSLINGYMLHDVVVTGNNGTIDGMGMVWWEWYSSHSLNHSRPHLVEIVASDNVVVSNLTFLNAPAYSIHPVYCSHVHIQNVSISAPPESPYTVGIVPDSSEHVCIEDCIVGMGFDAISLKSGWDEYGIAYGRPTEKVHIRRVHLHAFSGSALAFGSDMSGGISDVVVEHAHVLNSNSGIEFRTTRGRGGYMKDIVISDIEMENVHTAIAATGNCGSHPDDNFDPNALPLLDHITLRDVTGTNITIAGNFAGIEESPFTNICLSNITLSTDSVSTMTWECSNVSGFSDSVLPEPCPELGNPSYDSSSSCFLSISGKTAVL 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00128 450 SMART pbh1 231 252 IPR006626 -
Viun9g00128 450 SMART pbh1 181 203 IPR006626 -
Viun9g00128 450 SMART pbh1 265 287 IPR006626 -
Viun9g00128 450 SMART pbh1 204 230 IPR006626 -
Viun9g00128 450 SMART pbh1 293 314 IPR006626 -
Viun9g00128 450 SMART pbh1 322 343 IPR006626 -
Viun9g00128 450 Pfam Glycosyl hydrolases family 28 135 414 IPR000743 GO:0004650|GO:0005975
Viun9g00128 450 PANTHER PECTIN LYASE-RELATED 5 435 - -
Viun9g00128 450 Gene3D - 26 419 IPR012334 -
Viun9g00128 450 SUPERFAMILY Pectin lyase-like 32 428 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00128 Viun-Chr9 760725 763616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00128 1 440 Glycoside Hydrolase AT3G16850 63.575 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00128 - - gmx:100777503 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00128 9 760725 763616 Viun9g00128 9 760725 763616 ECH
Viun3g05696 3 62518836 62521799 Viun9g00128 9 760725 763616 PCT