Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05696 ATGCTAGTAGCATTACTCTTGCTGCTGTCGCTAAGCAATGAAGTCAGAGTCAATGGTGATGGTGGTAACAGGCAGTGTGAGCATAACCCAGCACCAAAGCCAAGACCGCACACTGTGTCCATCTTGGAGTTTGGAGCGGTTGGGGATGGTAAAACATTGAACACTATTGCATTCCAGAATGCCATATTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGTTATATGTGCCACCAGGAACATGGTTGACTAAAAGTTTCAATCTTACGAGTCATCTGACACTGTTCTTGGAAAAAGGTGCTGTCATTCTTGGATCTCAGGATCCGTTTCACTGGGATGTTATTGATCCATTACCTTCTTATGGTCGAGGAGTTGAAGTTCCCGGGGGAAGATACCAGAGTTTAATAAATGGATACATGTTAGATGATGTGGTGATAACAGGTAACAGTGGAATCATTGATGGCATGGGATTGGCGTGGTGGGAATTGTTTAGCTCTCATTCCCTCAACTATAGCCGACCCCATATTATTGAATTAGTGGCATCTGATCATGTGGTGGTTTCAAATCTCACATTCTTGAATGCACCTGCATATAGCATCCACCCAGTTTATTGCAGCAATGTACATATTTACAATGTTTCAATTTCTGCTCCTCCAGAATCCCCTTATACCATTGGCATAGTACCAGATTCTTCTGATCATGTTTGTATAGAGGATTGTGTCATTGAAACGGGGTACGATGCAATTGCCCTGAAAAGTGGCTGGGACGAATATGGCATTGCCTATGGCAGGCCAACAGAGAATGTACACATCAGAAGGGTGCATTTGCAAGCTTCTTCTGGCTCTACTATTGCATTTGGCAGTGACATGTCTGGTGGAATTTCAAACATTCTTGTGGAGAATGTTCATCTTTACAATTCAAGGAGTGGCATTGAATTCAGAACTATGAGGGGTAGAGGTGGTTATATAAAGGAAATCGTGATATCAGACGTAGAAATGGAGAATATATACACTGCAATGGCCGCCACAGGTTATTGTGGATCTCATCCTGATGACAAATTTGATCCAAATGCTCTTCCACATTTGGACCACATTATTTTGCAAGATATGATTGGCACAAACATCACTGTTGCTGGAAGCTTCGCCGGACTACAAGAATCTCCCTTCACAAACATATGCCTTTCCAACATAAATTTGTCTATAAATTCTGTTGCTTCCATTCCTTGGGAATGTTCAAACATCTCTGGATTTTCAGATTCTGTTCTTCCCAAACCGTGTCCTGATCTTGAGATCCTTTCGGATTGTCTCTCCCTTCCGAGTGTGAAGGGAAAAACGGCGGACATGTGA 1350 0.4267 MLVALLLLLSLSNEVRVNGDGGNRQCEHNPAPKPRPHTVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTKSFNLTSHLTLFLEKGAVILGSQDPFHWDVIDPLPSYGRGVEVPGGRYQSLINGYMLDDVVITGNSGIIDGMGLAWWELFSSHSLNYSRPHIIELVASDHVVVSNLTFLNAPAYSIHPVYCSNVHIYNVSISAPPESPYTIGIVPDSSDHVCIEDCVIETGYDAIALKSGWDEYGIAYGRPTENVHIRRVHLQASSGSTIAFGSDMSGGISNILVENVHLYNSRSGIEFRTMRGRGGYIKEIVISDVEMENIYTAMAATGYCGSHPDDKFDPNALPHLDHIILQDMIGTNITVAGSFAGLQESPFTNICLSNINLSINSVASIPWECSNISGFSDSVLPKPCPDLEILSDCLSLPSVKGKTADM 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05696 449 Pfam Glycosyl hydrolases family 28 136 416 IPR000743 GO:0004650|GO:0005975
Viun3g05696 449 Pfam Pectate lyase superfamily protein 39 96 IPR024535 -
Viun3g05696 449 SMART pbh1 183 205 IPR006626 -
Viun3g05696 449 SMART pbh1 295 316 IPR006626 -
Viun3g05696 449 SMART pbh1 233 254 IPR006626 -
Viun3g05696 449 SMART pbh1 206 232 IPR006626 -
Viun3g05696 449 SMART pbh1 267 289 IPR006626 -
Viun3g05696 449 Gene3D - 21 419 IPR012334 -
Viun3g05696 449 SUPERFAMILY Pectin lyase-like 30 429 IPR011050 -
Viun3g05696 449 PANTHER PECTIN LYASE-RELATED 7 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05696 Viun-Chr3 62518836 62521799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05696 1 430 Glycoside Hydrolase AT3G16850 62.558 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05696 - - gmx:100802343 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05696 3 62518836 62521799 Viun3g05696 3 62518836 62521799 ECH
Viun3g05696 3 62518836 62521799 Viun9g00128 9 760725 763616 PCT