Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00085 ATGAGTACTATGAAATTTTGCCGTGAATGTAACAACATTCTCTACCCTAAGGAAGACAGAGATCAAAAGATTCTTCTCTACGCTTGCCGCAACTGCGACCATCAGGAGGTTGCGGATAACTTCTGTGTGTACAGGAATGAGATACATCATTCTGTTGGAGAGCGCACTCAAGTGTTACAGGATGTAGCTGCAGATCCAACACTTCCTCGGACCAAGTCTGTTCGCTGTACTCAATGCAATCATGGTGAAGCTGTCTTTTTCCAGGCAACAGCCAGAGGGGAAGAAGGAATGACACTTTTTTTTGTTTGCTGCAATCCAAACTGTGGATACCGATGGAGAGACTGA 345 0.4493 MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNFCVYRNEIHHSVGERTQVLQDVAADPTLPRTKSVRCTQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00085 114 ProSiteProfiles Zinc finger TFIIS-type profile. 72 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Viun9g00085 114 CDD Zn-ribbon_RPB9 64 113 IPR034012 GO:0006379
Viun9g00085 114 Gene3D - 1 46 - -
Viun9g00085 114 SMART rpol9cneu 5 58 IPR001529 GO:0006351
Viun9g00085 114 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 6 32 IPR019761 -
Viun9g00085 114 SUPERFAMILY Zinc beta-ribbon 51 114 - -
Viun9g00085 114 Pfam RNA polymerases M/15 Kd subunit 4 39 IPR001529 GO:0006351
Viun9g00085 114 PANTHER DNA-DIRECTED RNA POLYMERASE 1 113 IPR012164 GO:0003899|GO:0006351
Viun9g00085 114 FunFam DNA-directed RNA polymerase II subunit RPB9 1 46 - -
Viun9g00085 114 SUPERFAMILY Zinc beta-ribbon 1 48 - -
Viun9g00085 114 PIRSF RNApol_RpoM 4 114 IPR012164 GO:0003899|GO:0006351
Viun9g00085 114 Gene3D - 47 114 - -
Viun9g00085 114 FunFam DNA-directed RNA polymerase subunit 47 114 - -
Viun9g00085 114 Pfam Transcription factor S-II (TFIIS) 75 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Viun9g00085 114 SMART Cys4_2 74 114 IPR001222 GO:0003676|GO:0006351|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00085 Viun-Chr9 516877 519181 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00085 K03017 - gmx:100305979 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00085 9 516877 519181 Viun9g00085 9 516877 519181 ECH
Viun3g05661 3 62237238 62240899 Viun9g00085 9 516877 519181 PCT