LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g05661	ATGAGTACACTGAAATTTTGCCGTGGATGCAACAATGTTCTATTCCCTACAGAGGACAAGGAGAACAAGGTTCTTCTCCACACTTGCCGCAACTGCAATCATGAGGAGCGTGCTGATACTAACGTTGTTTATAGAAATAAGTTACATCACTCTGTTCAAAGACGCACTCGAGAGCTGGAAAATGTAGCTGCAGATCCAACACTTCCTCGCACCAAGTCTGTTCGCTGCTCTCAATGCAACCATGGAGAAGCTGTCTTTTTCAAGGCAACGGCCAAAGGGGAAGAAGGCTCGGCACTCAATTTTGTTTGCTGCAACCTGACTTGTGGCAACCGTTGGAGAGAGTAG	345	0.4667	MSTLKFCRGCNNVLFPTEDKENKVLLHTCRNCNHEERADTNVVYRNKLHHSVQRRTRELENVAADPTLPRTKSVRCSQCNHGEAVFFKATAKGEEGSALNFVCCNLTCGNRWRE	114

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g05661	114	CDD	Zn-ribbon_RPB9	64	113	IPR034012	GO:0006379
	Viun3g05661	114	Pfam	RNA polymerases M/15 Kd subunit	4	40	IPR001529	GO:0006351
	Viun3g05661	114	ProSitePatterns	RNA polymerases M / 15 Kd subunits signature.	6	32	IPR019761	-
	Viun3g05661	114	SUPERFAMILY	Zinc beta-ribbon	55	114	-	-
	Viun3g05661	114	ProSiteProfiles	Zinc finger TFIIS-type profile.	72	113	IPR001222	GO:0003676\|GO:0006351\|GO:0008270
	Viun3g05661	114	SMART	rpol9cneu	5	58	IPR001529	GO:0006351
	Viun3g05661	114	SUPERFAMILY	Zinc beta-ribbon	1	48	-	-
	Viun3g05661	114	FunFam	DNA-directed RNA polymerase subunit	47	114	-	-
	Viun3g05661	114	Pfam	Transcription factor S-II (TFIIS)	75	113	IPR001222	GO:0003676\|GO:0006351\|GO:0008270
	Viun3g05661	114	Gene3D	-	47	114	-	-
	Viun3g05661	114	PANTHER	DNA-DIRECTED RNA POLYMERASE	1	114	IPR012164	GO:0003899\|GO:0006351
	Viun3g05661	114	Gene3D	-	1	46	-	-
	Viun3g05661	114	FunFam	DNA-directed RNA polymerase II subunit RPB9	1	46	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g05661	Viun-Chr3	62237238	62240899	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g05661	K03017		-	gmx:100806190	211.46

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun3g05661	3	62237238	62240899	Viun3g05661	3	62237238	62240899	ECH
	Viun3g05661	3	62237238	62240899	Viun9g00085	9	516877	519181	PCT