Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02992 ATGTGTATTACTAATCAGGAAGTTATCAAGCAATTGGAGTCCCTTTTGGAAAACTTGGATGAGCAACAGAAGAACACATTCCAGAATATGCACCAGGGCTATCCAACAGAAACATTAGTACGGTTTCTCAAAGCAAGGGACGGCAATGTTGTGAAAGCACATAAAATGTTGATTGATTGTTTACAATGGAGAGTAGAAAATGAGATTGACAATGTTTTAGCGAAGCCTATACCACCTGGTTTGTTCAGACGTTTGCGAGATTCTCAACTTGTGGGAATGTCTGGTTTCACAAAGGAGGGCTTACCTGTCATTGTTATTGGTGTTGGGCTCAGCACATTTGATGAAGGGCTTGACAAATACTATGTACAGTTGCACATCCAAATGAATGAATATAGGGATCGAGTGATCATGCCAAGAGCTACAAAGAATCATGGAAGACACATTGATACTTGTGTGAAAGTCTTGGATATGACTGGTTTAAAACTCTCAGCACTGAACCAATTGAAGCTTTTGACTGCTATAACTACAATAGATGACTTGAACTATCCAGAAAAGACCGACGCATATTACATAGTTAATGTTCCATATGTATTCTCTGCGTGTTGGAAGGTTGTAAAGCCTCTTTTGCAGGAAAGAACAAGGAAGAAAGTCCATGTACTTAAAGGTTGTGGCATGGAGGAATTACTGAAGGTAATGGACTATGCATCCCTCCCACATTTTTGCAGAAAGGAGGATTCCAGGGTGCCCCAACATCATGCAGCTGGAAATACTGAAAATTGTTTCTCCTTTGATCATGTCTTCCATAAACAACTATATAATTACATCGAGCAGCAAGCTATATTCATAGAGTCCATATCTCAGGATTCTTTCCATGTAGATTTACCGGAGCCAGACCCAATTGATGCCAAAATTGCCAAGACTATAGAAACTGAGTTCCACAAACTGGAAATTCAGAATGGCCTTACCAATTGA 972 0.3971 MCITNQEVIKQLESLLENLDEQQKNTFQNMHQGYPTETLVRFLKARDGNVVKAHKMLIDCLQWRVENEIDNVLAKPIPPGLFRRLRDSQLVGMSGFTKEGLPVIVIGVGLSTFDEGLDKYYVQLHIQMNEYRDRVIMPRATKNHGRHIDTCVKVLDMTGLKLSALNQLKLLTAITTIDDLNYPEKTDAYYIVNVPYVFSACWKVVKPLLQERTRKKVHVLKGCGMEELLKVMDYASLPHFCRKEDSRVPQHHAAGNTENCFSFDHVFHKQLYNYIEQQAIFIESISQDSFHVDLPEPDPIDAKIAKTIETEFHKLEIQNGLTN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02992 323 Coils Coil 2 29 - -
Viun8g02992 323 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 78 238 IPR001251 -
Viun8g02992 323 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 322 - -
Viun8g02992 323 CDD SEC14 90 240 IPR001251 -
Viun8g02992 323 Pfam CRAL/TRIO domain 89 240 IPR001251 -
Viun8g02992 323 Pfam CRAL/TRIO, N-terminal domain 10 59 IPR011074 -
Viun8g02992 323 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Viun8g02992 323 Gene3D - 4 265 IPR036865 -
Viun8g02992 323 SMART sec14_4 85 246 IPR001251 -
Viun8g02992 323 SUPERFAMILY CRAL/TRIO domain 82 240 IPR036865 -
Viun8g02992 323 SUPERFAMILY CRAL/TRIO N-terminal domain 14 75 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02992 Viun-Chr8 37294013 37298087 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02992 29 315 Acyl Lipid Metabolism Gene Families AT1G55840 66.323 8.77e-148 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02992 K26544 - gmx:100815791 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02992 8 37294013 37298087 Viun8g02992 8 37294013 37298087 ECH
Viun6g00985 6 19363187 19367374 Viun8g02992 8 37294013 37298087 PCT