Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00985 ATGGGTGGTGGAAATCAAGAGGCTGTTAAGCAGTTGCAGTCCATGATTGAAAATGTGGATGAGCAGCTGAAGAACACATTTCAGAACATGCACCAAGGTTATCCAGCTGAAACATTAATACGGTTTCTCAAAGCAAGGGATTGGAATGTTGGCAAAGCTCATAAAATGTTAAGTGATTGTTTGAACTGGAGAGTGGAAAATGAGATTGACAAAGTTTTAACGAAACCTATTCCTGCGGATTTATATAGAGGCATACGGGATTCTCAACTCATAGGAATGTCTGGTTACTCAAAGGAGGGTCTACCAGTCATTGCCGTTGGTGTTGGGCTCAGTACATATGATAAAGCTTCTGACAAATACTATATACAATCACACATTCAAATCAATGAATATAGGGATCGAGTGATCTTGCCAACAGCTACAAGGAAGCATGAACGATACATTGGCACCTGTGTGAAAGTCTTGGATATGACTGGTCTAAAGTTTTCAGCACTGAACCAATTGAGGTTGTTGACTGCTATATCCACAATAGATGACTTGAACTACCCGGAAAAGACAGACACATACTATATTGTTAATGCACCATATGTATTCTCTGCATGTTGGAAGGTTGTAAAGCCTCTTTTGCAAGAAAGAACAAGGAGGAAAATCCAGGTGCTGCAAGGTTGCGGGAAAGAGGAATTACTGAAGGTAATGGACTATGCATCCCTCCCACACTTCTGCAGAAAAGAAGATTCCAAGTCATCGAAACATAATGCATCAGGAAACACTGAAAATTGTTTCTCCTTGAATCATGTTTTCCACCAACAACTCTACAATCATATCAAGCATCAAGCTATCATTATGGAGTCAATCTCACCTCCAATCAGACAAGGGTCCTTCTATGTGGACATTCCAGAGCCAGACCCAGATGATGCTAAAATAGCCAAAACCATAGAAACTGAGTTCCACAAATTGGAGAATCAGAAAAATGGCTTCACCAACTCTCGAAATGGTGTTGCAGTCAATGGCCATCGAAATACAAGCTACTAA 1032 0.405 MGGGNQEAVKQLQSMIENVDEQLKNTFQNMHQGYPAETLIRFLKARDWNVGKAHKMLSDCLNWRVENEIDKVLTKPIPADLYRGIRDSQLIGMSGYSKEGLPVIAVGVGLSTYDKASDKYYIQSHIQINEYRDRVILPTATRKHERYIGTCVKVLDMTGLKFSALNQLRLLTAISTIDDLNYPEKTDTYYIVNAPYVFSACWKVVKPLLQERTRRKIQVLQGCGKEELLKVMDYASLPHFCRKEDSKSSKHNASGNTENCFSLNHVFHQQLYNHIKHQAIIMESISPPIRQGSFYVDIPEPDPDDAKIAKTIETEFHKLENQKNGFTNSRNGVAVNGHRNTSY 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00985 343 Pfam CRAL/TRIO domain 89 240 IPR001251 -
Viun6g00985 343 Coils Coil 5 29 - -
Viun6g00985 343 Pfam CRAL/TRIO, N-terminal domain 9 59 IPR011074 -
Viun6g00985 343 MobiDBLite consensus disorder prediction 323 343 - -
Viun6g00985 343 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 78 249 IPR001251 -
Viun6g00985 343 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 329 - -
Viun6g00985 343 SUPERFAMILY CRAL/TRIO N-terminal domain 13 75 IPR036273 -
Viun6g00985 343 SUPERFAMILY CRAL/TRIO domain 80 240 IPR036865 -
Viun6g00985 343 CDD SEC14 82 240 IPR001251 -
Viun6g00985 343 SMART sec14_4 85 246 IPR001251 -
Viun6g00985 343 Gene3D - 4 279 IPR036865 -
Viun6g00985 343 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00985 Viun-Chr6 19363187 19367374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00985 1 336 Acyl Lipid Metabolism Gene Families AT5G47730 64.095 2.34e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00985 K26544 - gmx:100817955 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00985 6 19363187 19367374 Viun8g02992 8 37294013 37298087 PCT