Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02939 ATGGATATTTCTCACTATACAAGGATTGTCTTTGATAAAATTCATAAATTTGAGCCAGAGCATGCTAGGAAGATAATTGGCTATCTCCTTCTACAAGACCATGGAGAACTAGAAATGGCAAAATTGGCTTCGTACCCTGACTATTTCATTCGTGAAGTTGCATTTCAGGCCAAAAGGGAGCTTCTAAGATTGTCTGCGAAACCAGATATGCTTCCAATTTCACACATGGTCAACCCTCAACAAGGTTATAGCCATTTAGCAGTAATGTCTCCAAGAACTCCTACTACAACAAACTTTCAGGCTCCCCCTCTGTATTGGGATCCACAACCTGCTGGAAATATCAATTCAGACTTTATGGCAATGAATTACTTGGATTCTGTCATGGAGCTTCAGAAGCAGACACAACTGTGCAGTTTGGAGAATCGTGTAGATGCTGTAAAGACTGGAACTGTAGGGGTTGCCAATGATTACTATAGAGATGCTTCTGCTGCCAATTTGGGTGGAAAAGCTGGGAGAAGGTTTTCTGAATATCCAATGAAAGTTTGTCACTATTTCAACAAAGGATTCTGCAAGCATGGAAATAACTGCAGATTCTATCATGGTCAAGTTGCCCCTGAGAATTTATCTCAGATGTATGGAAATGATGCTAATAATGAGGATCATGTGATTTCTCCAGGGTCACTAGCACAGCTAGAGTCAGAAATTATTGAGCTTCTAAGATCAAGGGATGATGCAATATCGATTGCTTCTCTGCCAATGGCGTACTATGATAGATATAAGAAGGTACTGCAAGCAGATGGTTATTTAACTGAGAGCCAGAGACACGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTTGCGCGACTGAAAAATAGTATTCGGCTAATAGTGAGACCCCATGGGCAGCATTCAGTGACTCTGGCAGAAGATGCTCCCACACAAATGCAGAAGGGAGAGTTTGCTCGAAATATCAGTGCTTCACGACAGATATATCTGACATTCCCGGCTGACAGCACTTTCACAGAGGATGATGTCTCAAACTATTTCAACACATTTGGGCTTGTTGCAGATGTTAGAATTCCAAACCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGCTCATTCAGAAACTGTCAAAACTGTTTTGGATAAAGGGAATCCCCATTGTGTTCGGGGTTCTCGGGTTCTTGTGAAACCTTACCGGGAGAAAGCAAAGATTAATGAAAGATGCAGGAAGTACACTGATAGAATTGAGCATACGGTTTGTTATTCACCCCACTGTGTAGATACGGACTCTGAACTTAACTCCTCAAGTATGATGTCTTATTCAGAAGAGCATATAATTTCCCTTTCTCCAAGAAGTTTGGGGAATCATAGATCCTTTAGGAGGATGCTAATTCAAGAGCAAGAGCATGAACAGGCCCGGGAACATGAGAGGAGAAGCCTTGCACAAGCGCAGTTGTCCTCAAGATCTTTATCCAGCTCACCTCATTTTGGTTTCTCCTTGGAGGAGACAAAAGTTTCAGATGATCACTTCAATCTTCAGTCACCAGAAGAATCATTCAGTTTTCCACTGCATGCCAAATCCAGACATACAGACGACAATTTCTATGATGAGGAAAGTTTGGCTGCAACCACATCTCCTGAAATATTTTGTTGA 1662 0.4158 MDISHYTRIVFDKIHKFEPEHARKIIGYLLLQDHGELEMAKLASYPDYFIREVAFQAKRELLRLSAKPDMLPISHMVNPQQGYSHLAVMSPRTPTTTNFQAPPLYWDPQPAGNINSDFMAMNYLDSVMELQKQTQLCSLENRVDAVKTGTVGVANDYYRDASAANLGGKAGRRFSEYPMKVCHYFNKGFCKHGNNCRFYHGQVAPENLSQMYGNDANNEDHVISPGSLAQLESEIIELLRSRDDAISIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIVRPHGQHSVTLAEDAPTQMQKGEFARNISASRQIYLTFPADSTFTEDDVSNYFNTFGLVADVRIPNQQRRMFGFVTFAHSETVKTVLDKGNPHCVRGSRVLVKPYREKAKINERCRKYTDRIEHTVCYSPHCVDTDSELNSSSMMSYSEEHIISLSPRSLGNHRSFRRMLIQEQEHEQAREHERRSLAQAQLSSRSLSSSPHFGFSLEETKVSDDHFNLQSPEESFSFPLHAKSRHTDDNFYDEESLAATTSPEIFC 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02939 553 SMART rrm1_1 329 399 IPR000504 GO:0003723
Viun8g02939 553 SMART c3hfinal6 176 202 IPR000571 GO:0046872
Viun8g02939 553 Gene3D - 328 408 IPR012677 -
Viun8g02939 553 MobiDBLite consensus disorder prediction 471 497 - -
Viun8g02939 553 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 178 202 IPR000571 GO:0046872
Viun8g02939 553 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 395 IPR000504 GO:0003723
Viun8g02939 553 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 533 - -
Viun8g02939 553 Pfam OST-HTH/LOTUS domain 227 305 IPR025605 -
Viun8g02939 553 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 403 IPR000504 GO:0003723
Viun8g02939 553 Gene3D - 173 233 - -
Viun8g02939 553 ProSiteProfiles OST-type HTH domain profile. 227 309 IPR025605 -
Viun8g02939 553 SUPERFAMILY RNA-binding domain, RBD 338 409 IPR035979 GO:0003676
Viun8g02939 553 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 335 406 - -
Viun8g02939 553 CDD RRM_AtC3H46_like 330 399 IPR034365 -
Viun8g02939 553 ProSiteProfiles Zinc finger C3H1-type profile. 176 203 IPR000571 GO:0046872
Viun8g02939 553 SUPERFAMILY CCCH zinc finger 176 202 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02939 Viun-Chr8 37014251 37019630 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02939 - - gmx:100818984 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02939 8 37014251 37019630 Viun8g02939 8 37014251 37019630 ECH
Viun6g00909 6 18793152 18796944 Viun8g02939 8 37014251 37019630 PCT