Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00909 ATGGATATGGATGTTTCAGAATACACAGGTATAGTTTTAGGTAAACTTCAGAAATTTGAGCCTGAGAAGGCCTCAAAGATTTTAGGGTATCTCCTTGTCCAAGAACATGGGGAAGAAGACATGGCGAAATTGGCTTCACTACCTGATGATGTGCTTCGTGAAGTGGCGTTCCAGGCCAGAACCAAGCTTCAAAGGTCATCATCAGCTAGATCAATCATTCATCCAATTTCACCTCCCATGAATTTTGCCCAGTTATCAGTAATCACACCTACCACCCCTCTCACAGCAACAAGCTTCCAGGTTCAATCTCCGTTCTGGGATACTCAAATTAACAATGCCAATGCAGAATATATGGCACAGGGTTATTTGGATTCTATCTCTGAACTTCAAAAGCAAACCCCGTTCTTCACTCTGGATAATCATATGGTAATTGCTAATGGGACTTCCGACACTCCAGGTATTGCTAATGATTACTATGGCTTAGATGCTTCACCAGCTCCTAATTTGGCTGGAAAATCTGGTAGAAGATTTGACCATCCAGTGAAGACCTGTCACTACTTTAACAAAGGATTTTGTAAGCATGGAAATAGCTGTAGATACTATCATGGACTGGATGCATTCCCTCACATGTATGGAAATGATGGTTTTAATGATGATCAAGTGATTTCACCTGGGTCACTGGCACAACTAGAGTCAGAAATTGTTGAACTCCTGAAACTGAAAAAGGGTGGTTCTATATCAATTGCTTCCCTTCCAATGGCGTACTTTGAGAAGTACAAGAAGGTGCTGCAGGCTGATGGATACCTCACTGAGAGCCAGAGACATGGAAAATCTGGCTACAGTTTGACAAAGCTTCTTGCACGGTTGAAAAATAGCATTAGGCTAATTGACAGGCCTCATGGGCAGCATTCGGTTGTTCTGGCTGAAGATGCTCCAAAGTTCAATGGAAAGGGAGAATATGGTAAATACATCAGTGCATCACGACAGATATACCTGACATTTCCCGCTGACAGCACTTTTAGCGAGGCTGATGTTTCAAACTACTTTAGCACTTTTGGGAAAGTTCAAGATGTAAGGATTCCAAGCCAAGAAAGAAGGATGTTTGGGTTTGTGACATTTGATGATTCTGAAACTGTTAAAGCAATTTTGGATAAGGGAAATCCCCATTACGTCTGTGAATCACGGGTTCTTGTGAAACCTTACAAAGAGAAGCCAAAACTTATGCTCAGAAAGCACTCAGATAGAGTTGAGCACCAGCACCCTGCTTATTACTCAGCACACTACGTAGATGTTGACACTGAACCTACGCCAATTCCAAGAGGTTGCAGGAACCCTCGATCTCTGAGGAGCCTGATCATTGAACAGCAAGAGGAGGCTGCATTTGAATTTCAGAGAAGACGTTTTGCAGAGCTGCAGTTGGCCCAAAAATCTTTCACCACTTCACCCCATTTAGGCTTTAACGCAGCAAAAGCTTCAAATGATCATTTCAATGTCCATTCTGCAGAATCTCTCAATCATGTTCTGAATGACAAATCCGGATATATGGATAACAATTACACTGCTGAGGGCAGCAATCAAGGACTGAATCTCCCAGATAGCCCATTTTCATTTCCAGTAGATAGTGGAATTTCAGCAGTAATATAG 1644 0.4221 MDMDVSEYTGIVLGKLQKFEPEKASKILGYLLVQEHGEEDMAKLASLPDDVLREVAFQARTKLQRSSSARSIIHPISPPMNFAQLSVITPTTPLTATSFQVQSPFWDTQINNANAEYMAQGYLDSISELQKQTPFFTLDNHMVIANGTSDTPGIANDYYGLDASPAPNLAGKSGRRFDHPVKTCHYFNKGFCKHGNSCRYYHGLDAFPHMYGNDGFNDDQVISPGSLAQLESEIVELLKLKKGGSISIASLPMAYFEKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFNGKGEYGKYISASRQIYLTFPADSTFSEADVSNYFSTFGKVQDVRIPSQERRMFGFVTFDDSETVKAILDKGNPHYVCESRVLVKPYKEKPKLMLRKHSDRVEHQHPAYYSAHYVDVDTEPTPIPRGCRNPRSLRSLIIEQQEEAAFEFQRRRFAELQLAQKSFTTSPHLGFNAAKASNDHFNVHSAESLNHVLNDKSGYMDNNYTAEGSNQGLNLPDSPFSFPVDSGISAVI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00909 547 SMART rrm1_1 329 399 IPR000504 GO:0003723
Viun6g00909 547 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 335 406 - -
Viun6g00909 547 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 183 203 IPR000571 GO:0046872
Viun6g00909 547 SUPERFAMILY RNA-binding domain, RBD 339 423 IPR035979 GO:0003676
Viun6g00909 547 ProSiteProfiles OST-type HTH domain profile. 226 309 IPR025605 -
Viun6g00909 547 SUPERFAMILY CCCH zinc finger 178 203 IPR036855 GO:0046872
Viun6g00909 547 Gene3D - 176 243 - -
Viun6g00909 547 Gene3D - 332 406 IPR012677 -
Viun6g00909 547 Pfam OST-HTH/LOTUS domain 226 305 IPR025605 -
Viun6g00909 547 ProSiteProfiles Zinc finger C3H1-type profile. 178 205 IPR000571 GO:0046872
Viun6g00909 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 404 IPR000504 GO:0003723
Viun6g00909 547 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 3 539 - -
Viun6g00909 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 387 IPR000504 GO:0003723
Viun6g00909 547 CDD RRM_AtC3H46_like 330 399 IPR034365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00909 Viun-Chr6 18793152 18796944 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00909 - - var:108341215 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00909 6 18793152 18796944 Viun6g00909 6 18793152 18796944 ECH
Viun6g00909 6 18793152 18796944 Viun8g02939 8 37014251 37019630 PCT