Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02897 ATGGCACCCTCAACCTGTTTCCTTCTTTTATCCCTTCTGTTCCTTTCATCCTCCACGAGTGGTGTTCAAAATCATGAAGAGGGTTTCATCTCCATCACCATATCTGATAAGGGTCTCGATTTTGCCAAGGATATTCTGATAGACCAAGCTGTTGACTCTATTACCCTGTCTCAATTGCCAGAGATTGAGAAGACTGTTCAAGTCCCTCTTGTTGGAAAAGCCAAAGTTGTTCTTTCTGAAATCACTATCAATGATATCCAAGTAAATTCTTCATCTGTTAATACAGGAGAAACAGGCATTGCTCTTGTTGTTTCAGGTGCCACAGCTAACTTGAGTTTGAAGTGGAGGTACTCTGTCAGCAGTTGGTTAGTCCCAATTGGAATTTCTGATAGTGGAACCGCCACTGCAAGGGTTAATGATTTGCAAGTTGGACTTACTGTGAATTTAACGAATCAAGGAGGAACTCTTAAACTGCTTCTCTTGGATTCTGGATGCCATGTTAGAGATTTATCCATAAAGTTGCATGGTGGAGCAGCTTGGCTTTACCAAGTGCTAGTAGATGCTTTTGCAGGAAGTATAGCATCTGCGGTTGAAGAGGCAGTTTCTGATCAAATAAATGAGGGGATATCAACTCTTGATGTTTTATTACAATCTCTTCCAAAGACTTTCCCAATAGACGAAACAGCTGCTCTAAATGTTTCTTTTGTGAGCAATCCTAAGCTAAGTGATTCTGCTATTGAATTAGAAATTAATGGCTTATTCACAGAGAGGAACGAAATTTTGGCACCTCAAGGTTACCACAGAGGTTCAGACATTTCTGTTTCCCGTGGCGACCCTTTGCCAAAGATGATAACAATTTCATTACATGAAAATGTTTTCAAATCCGGTTCTTTGGTCTACTTCAGTGCAGATACTTTGAAATGGAGTGTTGATGAACTGCCTGATCAGAACCTTCTGAACACTGCTGAATGGAGATTCCTTATTCCTCAATTATACAAGCAATATCCAAACGATGACATGAATCTTGATATCTTTGTATCTTCTCCACCAGATATACAAGTGACAGACAAAGATGTTGGTGTCCAAATTTCCATAGATATAATACTAAATGTTCTGGAAGCTGGTGAAGTCGTACCTGTTGCATGCATCTCGGTGGATTTTAGTGCATCTTGTACTGCGGAGATCATAGGAAACAATCTTGCTGGTTGGCTTAAATTGAGAAAGTTTTCCACATACTTGAAATGGAGTAAGATAGGGAAACTGCACTTGAATCTGATTCAGTCAGTGACATCAGCTGTTCTCAAAACCGTTCTCATACCATACCTGAACTCACAGTTAGTGAGAGGAATTCCACTTCCAATTCTTAATGATTTTGCTCTTGAGAATGCTCGTATATTGTATGCTCCCCCATGGATTACTGTGTCCAGTGATGTTTCTTTCTTAGGACACTATTATCACAAGCATCTACCAGCTTATGTATCATAA 1485 0.3973 MAPSTCFLLLSLLFLSSSTSGVQNHEEGFISITISDKGLDFAKDILIDQAVDSITLSQLPEIEKTVQVPLVGKAKVVLSEITINDIQVNSSSVNTGETGIALVVSGATANLSLKWRYSVSSWLVPIGISDSGTATARVNDLQVGLTVNLTNQGGTLKLLLLDSGCHVRDLSIKLHGGAAWLYQVLVDAFAGSIASAVEEAVSDQINEGISTLDVLLQSLPKTFPIDETAALNVSFVSNPKLSDSAIELEINGLFTERNEILAPQGYHRGSDISVSRGDPLPKMITISLHENVFKSGSLVYFSADTLKWSVDELPDQNLLNTAEWRFLIPQLYKQYPNDDMNLDIFVSSPPDIQVTDKDVGVQISIDIILNVLEAGEVVPVACISVDFSASCTAEIIGNNLAGWLKLRKFSTYLKWSKIGKLHLNLIQSVTSAVLKTVLIPYLNSQLVRGIPLPILNDFALENARILYAPPWITVSSDVSFLGHYYHKHLPAYVS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02897 494 PIRSF Lipid_binding_protein 6 484 IPR030675 GO:0005615|GO:0008289
Viun8g02897 494 PANTHER OS06G0309200 PROTEIN 4 490 IPR045897 -
Viun8g02897 494 Pfam LBP / BPI / CETP family, N-terminal domain 38 212 IPR017942 GO:0008289
Viun8g02897 494 SMART bpi2_2 279 476 IPR001124 GO:0008289
Viun8g02897 494 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 32 242 IPR017943 GO:0008289
Viun8g02897 494 Gene3D - 37 217 - -
Viun8g02897 494 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 245 480 IPR017943 GO:0008289
Viun8g02897 494 Pfam LBP / BPI / CETP family, C-terminal domain 282 478 IPR001124 GO:0008289
Viun8g02897 494 SMART bpi1_3 34 259 IPR017942 GO:0008289
Viun8g02897 494 Gene3D - 31 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02897 Viun-Chr8 36837875 36841427 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02897 K05399 - gmx:100804747 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02897 8 36837875 36841427 Viun8g02897 8 36837875 36841427 ECH
Viun6g00833 6 18169603 18172671 Viun8g02897 8 36837875 36841427 PCT