Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00833 ATGGCACCCTCTATTTTTCTCTCTGTGTTGTGCCTTCTGTCGGTTCTGACATGTGGTTATGTGCAACCCCTTGAAGATGGTTTCATCTCTGGGGTCATATCTGACAAGGGTCTTGAATATGCCAAGGAGTTGCTGATAGAGAAGGGTATTGCTTCCATTGTTATGCTTCAGCTGCCAGAGATTGAAAATTCTGCACAGGTTTCTCTTGTTGGAAATGCTAAAGTGGTTCTTTCTAACATCACAATTACGGATGTTCAGGTCAATTCTTCATCTGTTAAGACGGGAGAGAATGGAATTGTTCTTGTTGTTTCAGGTTCCATTGTTAATTTAAGTATGAGGTGGAGGTACACTGTTAGCTCTTGGTTAATTCCAATTGGAATTTCGGATAAAGGAACTGCTTCAGTGAAGGTTACAGGTATGCAAGTGGGGCTTACAATAAATTTAAGGAACCAAGAAGGAACTCTGAAGTTGTCTCTCTTAGATTATGGATGTTATGTGGGAGACTTGTCTATAAAGTTGGACGGAGGTGCATCTTGGCTTTACCAACTGCTAGTTGATGCTTTTGAAGGGAATATAGCATCTGCAGTTGAAGAGGGTATTTCAGAGAAAATAAAAGAAGGGATAATGAAGCTTGACAATTTTTTGGACTCTCTTCCAAAGAATGTCTCACTAGACAAAACTGCTACACTAAATGTTTCTTTTGTTGGCAATCCTGTGTTGAGCAGTTCCTCCATTGCTATAGCAATTAATGGTTTATTCACAGAGAAAAAGGAAGTGTTACTACCTCAAAGTTACCACCAGAAAGAATTGAAGATTTCTTCTGCCTGTGGTGGTTTACCAAAGATGATAAAAGTATCAATACATGAAAACGTGTTCAAATCTGCTTCCCAAGTTTACTTCACTGCAGGTAAAATGGAATTGATTGTTGATGAACTTCCTGATCAGGCTATTTTGAACACTGCTGAATGGAGATTCATAGTTCCCCAGTTATACAAGCGATATCCAAATGATGACATGCAGCTTAACATCTCTATGTCTTCTCCACCAGTTATACAACTGACATATCAAGATGTTGGTGCAACTATTCTTGTAGATATAACAATTGAGGTTCTGGAAGATTTTGAAGTCATACCTGTTGCATCCATCTCAGTGGAAATTAGTGCTTCATGTGCTGTAGAAATTGTAGGAAATGACATTGTTGGTAGGCTCATATTACAGGATTTTTCTACATACTTGAAATGGAGCAAAATAGGGAAACTGCACATGCGTCTGATTCAGTCACTAATGTCAAGTGTCCTCAAAACTGTTGTCCTTCCATACTTGAACTTCAAATTAAAGAGAGGATTTCCATTACCAATTATTGATGGTTATGGCTTTCAGAATGCTGTTATCTTGTACAATCATCCATGGATTGCAGTGTGCAGTGATGTTTCCTTCTTAGAAGATTACTATTTAGGTCAACAATCATTTTCAGCTTATGTTTCATAG 1488 0.3824 MAPSIFLSVLCLLSVLTCGYVQPLEDGFISGVISDKGLEYAKELLIEKGIASIVMLQLPEIENSAQVSLVGNAKVVLSNITITDVQVNSSSVKTGENGIVLVVSGSIVNLSMRWRYTVSSWLIPIGISDKGTASVKVTGMQVGLTINLRNQEGTLKLSLLDYGCYVGDLSIKLDGGASWLYQLLVDAFEGNIASAVEEGISEKIKEGIMKLDNFLDSLPKNVSLDKTATLNVSFVGNPVLSSSSIAIAINGLFTEKKEVLLPQSYHQKELKISSACGGLPKMIKVSIHENVFKSASQVYFTAGKMELIVDELPDQAILNTAEWRFIVPQLYKRYPNDDMQLNISMSSPPVIQLTYQDVGATILVDITIEVLEDFEVIPVASISVEISASCAVEIVGNDIVGRLILQDFSTYLKWSKIGKLHMRLIQSLMSSVLKTVVLPYLNFKLKRGFPLPIIDGYGFQNAVILYNHPWIAVCSDVSFLEDYYLGQQSFSAYVS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00833 495 Gene3D - 32 465 - -
Viun6g00833 495 FunFam phospholipid transfer protein-like 36 216 - -
Viun6g00833 495 PIRSF Lipid_binding_protein 6 483 IPR030675 GO:0005615|GO:0008289
Viun6g00833 495 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 33 241 IPR017943 GO:0008289
Viun6g00833 495 SMART bpi2_2 277 482 IPR001124 GO:0008289
Viun6g00833 495 Pfam LBP / BPI / CETP family, C-terminal domain 278 466 IPR001124 GO:0008289
Viun6g00833 495 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 244 479 IPR017943 GO:0008289
Viun6g00833 495 SMART bpi1_3 33 258 IPR017942 GO:0008289
Viun6g00833 495 Pfam LBP / BPI / CETP family, N-terminal domain 37 208 IPR017942 GO:0008289
Viun6g00833 495 PANTHER OS06G0309200 PROTEIN 2 486 IPR045897 -
Viun6g00833 495 Gene3D - 36 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00833 Viun-Chr6 18169603 18172671 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00833 K05399 - gmx:100815362 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00833 6 18169603 18172671 Viun6g00833 6 18169603 18172671 ECH
Viun6g00833 6 18169603 18172671 Viun8g02897 8 36837875 36841427 PCT