Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02822 ATGATGGGTCAGATCGTGCGGAGGAAGAAGAAGGGGCGTCCCTCCAAGACAGATCTAGCACGCCGCTCCGCTCAATCTCCGGCAAACTCCCAGCCAGACCTACGACGGAGCCGCCGTCGCCGGAATGTGCGCTACAACATCGACTACGACGACTACCTTGACGAGGAGGATGAGGACGAGGAAGAGGACGAGAGGAGGCGCGAGAAGAAGAAGCTCAAGCTCGTGGTGAAGCTCAACAACCACGAGGAGGAGGACGATGACGAGGACGACGACGCGCCGAGTCATGTAGGGGCGCGTGGGGTGCACGCGCAGGAGGAAAAGGGGGAGGAGGAGGAGGAGGAAGAGGGAGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAAGGGAATGAGGAGGCGGAGGAGCAGGAAGAAGAGCGTGAGGCAAAGGGCAGAAAAGTGGATTCTAAAGGGCTCCACTCAGTTTCAGTGTTAGGAACTCCGTCGAAGCTTCCACCTGGGATTCCGTTGCCTGACAAGAGGACCCTGGAGTTGATCCTAGATAAGCTTCAGAAGAAGGACACATATGGTGTGTATGCCGAGCCAGTTGATCCAGAAGAGCTTCCTGATTATCATGATGTGATTGAGCATCCAATGGACTTTGCCACAGTGAGGAAGAAGTTGGCAAATGGATCCTATCCTACCTTGGAACAATTTGAGAGTGATGTATTTTTGATTTGCTCGAATGCAATGCAATACAATGCAGCGGAGACTATATACCACAAACAGGCAAGATCGATACAAGAACTGGCTAGGAAAAAGTTTGAAAAGTTAAGGTTTGACTTTGATCGCTCTCAGAGTGAGCTGAAGTCTGAACAAAAAACTAGGTCTAATTCCCTGGTTAAGAAGCCAGCAAAGAAGCCACTGGGTCATACTTCACAGGAACCAATTGGCTCTGATTTTTCCTCAGGTGCAACTCTTGCTACTATTGGAGATGTATTGCCAACATCCCATCCAATGCAAGGTGTCGTTTGTGAAAGGCCTGGCAATATTGATGGCCTTGTGGAGGGGAATGCTTTCATTATTGATGCAAATCAAGAGAAAGCAGAAGACTACATATCAGGGAGGGGTCTGCTCTCCAAGTTGGGAAGGAAACCATCTATGCAAGATGTGGAACGTCGTGCAACTTATAATATGCCTAATCCACCAGTTACTAGATCGGATTCTGTATTTTCGACATTTGAGGGTGAAGTGAAGCAGCTGGTTACTGTTGGACTTCAAGCTGAACACTCCTATGCCAGGAGTTTGGCTCGTTTTGCTGCAACTCTAGGACCTACAGCTTGGAAAATCGCTTCCCAGAGGATTCAGCAGGCACTGCCACCTGGTTGTAAATTTGGTCGTGGTTGGGTTGGAGAGTATGAACCACTTCCAACACCAGTATTAAAGCTTGATAATCTTGCCCAACAGCAACCTATTTTGGGGACTAAGATGCAGTCTACTGCTGAGTTAATAAAGGGCGACAAAAATTGTAGGAATGTGGAATCTACCATGGAACATCCTGTTAATGGACCAATCCATGAGGGAAAACAGCCTTCTGTATGTTCTAGTAGTGGGCTTACATCGGATGGCATATCATCTTTGTTTGGTTCTCCTGGATCAAGACCCAACTCTCATGACAATCTCTTTTATCAGCAGCCCAATGTCCAAACTAGGAACCTCAACAAGTCTGAGAACAAGGGTTTGAAACAAGTGGAATTAAACTCTTTACCCTCCAGTGATCAGAATAATGCTAGTCTAGTCGCAAAGCTTACAAGTAATACTCCTGCAGCAGTGCCTAAGCCCAGAGAAATGATACCTAGTAACTTGACTATTTTACCGTCTATGCCTTTCAAGCAGCCAGATACCAACGGAGTTGTTGGTGGAGAGTTGCCCAATGGAAAAGTAAGGAATACCAGTTTAAACAGACGGATGCCTGGTGCATCATCCGAAAGTACATCAAATCAAACAGCTAGATCAGCTCCCTTTGTTTCCCATGGACAGGAGCAGACTCTTAGTGACCCAGTTCAGTTGATGAGGATGTTAGCCGAAAAGACACAAAAACAACAGACTTCTAGTTCATCCAATCATTCCCCTGCTGACACCCCACCAGTGACACCATCAGTTCCATCAGGGCGGAGAGAGGATTCGGGCAATGCTTCAGCAGCAGCTGCCCGTGCATGGATGTCTGTTGGTGCAGCAGGTTTTAAACAAGGACCTGAAATTTCTAGTTCACCCAAAAGTCAGATTTCTGCCGAATCATTGTACAACCCAGCGAGAGAGTTCCATCAGCCCTTTTCACGAATTAGGGGAGAGTTTTCTCCTGGTGGAACGCCTTTCCAGTCTGAGAAGAACAATTTTCCCTTTCAGGGACTTGTACCCCAATCTCAACCTATTCAACCAGTTGGTGCTTCACAGTTTCCAAACAGACCTATGGCTTTCCCTCAAGTAGCAGCTTCTGACCTGTCAAGATTTCAGATACCACCTTGGCGGGGTATCCGACCTCACAGTCAACCAAGACAGAGACAAGAAACACTTCCTCCTGACCTGAACATTGGTTTCCAACCTCCTGGTTCACCTGCAAAACAATCATCTGGTGTGCTGGTTGACTCTCAGCAACCAGACCTAGCTTTGCAACTGTGA 2655 0.478 MMGQIVRRKKKGRPSKTDLARRSAQSPANSQPDLRRSRRRRNVRYNIDYDDYLDEEDEDEEEDERRREKKKLKLVVKLNNHEEEDDDEDDDAPSHVGARGVHAQEEKGEEEEEEEGEEEEEEEEEEEGNEEAEEQEEEREAKGRKVDSKGLHSVSVLGTPSKLPPGIPLPDKRTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRKKLANGSYPTLEQFESDVFLICSNAMQYNAAETIYHKQARSIQELARKKFEKLRFDFDRSQSELKSEQKTRSNSLVKKPAKKPLGHTSQEPIGSDFSSGATLATIGDVLPTSHPMQGVVCERPGNIDGLVEGNAFIIDANQEKAEDYISGRGLLSKLGRKPSMQDVERRATYNMPNPPVTRSDSVFSTFEGEVKQLVTVGLQAEHSYARSLARFAATLGPTAWKIASQRIQQALPPGCKFGRGWVGEYEPLPTPVLKLDNLAQQQPILGTKMQSTAELIKGDKNCRNVESTMEHPVNGPIHEGKQPSVCSSSGLTSDGISSLFGSPGSRPNSHDNLFYQQPNVQTRNLNKSENKGLKQVELNSLPSSDQNNASLVAKLTSNTPAAVPKPREMIPSNLTILPSMPFKQPDTNGVVGGELPNGKVRNTSLNRRMPGASSESTSNQTARSAPFVSHGQEQTLSDPVQLMRMLAEKTQKQQTSSSSNHSPADTPPVTPSVPSGRREDSGNASAAAARAWMSVGAAGFKQGPEISSSPKSQISAESLYNPAREFHQPFSRIRGEFSPGGTPFQSEKNNFPFQGLVPQSQPIQPVGASQFPNRPMAFPQVAASDLSRFQIPPWRGIRPHSQPRQRQETLPPDLNIGFQPPGSPAKQSSGVLVDSQQPDLALQL 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02822 884 SMART bromo_6 164 272 IPR001487 GO:0005515
Viun8g02822 884 MobiDBLite consensus disorder prediction 1 170 - -
Viun8g02822 884 MobiDBLite consensus disorder prediction 688 706 - -
Viun8g02822 884 MobiDBLite consensus disorder prediction 861 884 - -
Viun8g02822 884 MobiDBLite consensus disorder prediction 278 314 - -
Viun8g02822 884 SUPERFAMILY Bromodomain 160 270 IPR036427 GO:0005515
Viun8g02822 884 MobiDBLite consensus disorder prediction 688 728 - -
Viun8g02822 884 Coils Coil 53 73 - -
Viun8g02822 884 MobiDBLite consensus disorder prediction 628 674 - -
Viun8g02822 884 MobiDBLite consensus disorder prediction 107 136 - -
Viun8g02822 884 MobiDBLite consensus disorder prediction 832 884 - -
Viun8g02822 884 CDD Bromodomain 171 267 - -
Viun8g02822 884 ProSiteProfiles Bromodomain profile. 183 253 IPR001487 GO:0005515
Viun8g02822 884 ProSitePatterns Bromodomain signature. 189 245 IPR018359 -
Viun8g02822 884 Pfam Bromodomain 177 257 IPR001487 GO:0005515
Viun8g02822 884 PANTHER BROMODOMAIN CONTAINING PROTEIN 7 883 - -
Viun8g02822 884 MobiDBLite consensus disorder prediction 1 16 - -
Viun8g02822 884 PRINTS Bromodomain signature 234 253 IPR001487 GO:0005515
Viun8g02822 884 PRINTS Bromodomain signature 216 234 IPR001487 GO:0005515
Viun8g02822 884 PRINTS Bromodomain signature 200 216 IPR001487 GO:0005515
Viun8g02822 884 MobiDBLite consensus disorder prediction 63 81 - -
Viun8g02822 884 Coils Coil 101 145 - -
Viun8g02822 884 Gene3D - 101 291 IPR036427 GO:0005515
Viun8g02822 884 MobiDBLite consensus disorder prediction 639 674 - -
Viun8g02822 884 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02822 Viun-Chr8 36470112 36475656 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02822 K22184 - gmx:100792844 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02822 8 36470112 36475656 Viun8g02822 8 36470112 36475656 ECH
Viun6g00797 6 17762979 17769192 Viun8g02822 8 36470112 36475656 PCT