Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00797 ATGGTTCAGATCGCAAGGAGGAAGAAGGGACGGCCGTCAAAGGCGGATCTGGCGCGCCGCTCCGGTGAGTCTCCGGCAGCCGCGTCGCAGCCCGATCTCCGGCGAAGCCACCGGCGCCGGAGCGTGAGGTACAACATCATCGACTACGATGGCGACTACCTAGACGACGAGGAGGACGAGAGGAGGCGCGAGAAGAAGAAGCTCAAGCTCATGGCGAAGCTGAACCAGGATGGCGAAGAAGAGCGTGAAGAAGAAAACGACATGACGCCAAGCCGCACTTGCGCTGATACGCCGGCGGAAGATTACGAGGACGACGAAAACGAACAAGAGGAAGAGCAAGAACATGAGCAAGAGGAAGAGCAAGAAGAAGACGCAGATGGCGTGGTAAAGGGCAGAAAAGTAGAATCGAAAGGGCTCCACTCTATTTCTGTTTCAGGAACTCCGGTTATTCTTCAATCTGGGATTCCGTTACCTGATAAGAGGACTCTGGAATTGATCCTTGACAAGCTTCAGAAGAAGGACACTTACGGTGTGTTTGCGGAGCCTGTTGATCCAGAAGAGCTACCTGATTATCATGATGTGATCGACCATCCCATGGACTTTGCCACTGTGAGGCAGAAGTTGGCAGCTGGATCTTATACTACTTTAGAACAATTTGAGAGTGATATATTTTTAATTTGCTCAAACGCAATGCAATACAATGCAGCGGAGACTATATACCACAAACAGGCACGATCAATACAAGAACTTGGACGGAAGAAGTTTGAGAAGTTAAGGATTGGCTTTGAACGGTCTCAGATGGAGCAGAAATCAGAGCAAAAGGCAGGATCTAATTATTTGGTTAAGAAGCAACTGAAGAAGCCTTTAGTACGTACTTCACTGGAACCTGTTGGCTCTGATTTCTGTTCAGGAGCGACTCTTGCTACTATTGCAGATTTACAGCCAACTTCCCATCCGATGCAAGGTGGTAGATGTGAGAGGCCTGGCAATATTGATGGTATTTTGGAGGCAAATGCTTTCTGGATTGATGCAAATCAAGAGAAAGCTGAAGACGTTTTATCAGGGAAGGGCCTTCACTCCAAGTGGGGAAGGAAGTCCGTTGTGCTTGATGAAAGTCGGCGTGCATCTTATAACATGTCCAATCAACCAATTGGTCGTTCAGAATCAATCTTTATGACTTTTGACAGTGAAATGAAGCAGCTGGTTGCTGTTGGGCTTCATGCAGAGTATTCCTACGCTAGAAGTTTGGCTCGATTTAGTGCATCTCTTGGACCTATTGCTTGGAAAATTGCTTCCCACAGGATTCAGCAGGCTCTGCCACCTGGCTTTAAATATGGTCGTGGTTGGGTTGGAGAGTATGAACAGCTTCCAACCCCAATATTAATGGTTAATAATGAGGTCCATAAAGGAACTAGTTTGGCCATGAAGTCGCATTCAACTATTGAATTACCAAAGGGTGACAAAAATTGTAAGAATGTGGAATCCAGCATTGAGCATCCTGTAAATAGGCAGATGCTAGACGGAAAACATCCTTTGATGCCTGATGTTGAAGGAAAACCTTTCTTTGGTTCTGCTGGAGAAAGGCTATGTGCTCCGGCCAACATCCTAAATCAGGAGCAGAACAACCAATCCAGGAAAATCGGCAAACCCGAGAAGAAGGGTTTGAAACAAGAAGAGTTGAATTCTTTATCCTCAAGTAAGCAGAATAACAATGTCCTGGTTGCAAAGTTTACTAGTAACACTCCTGCAGCAGAGTCCAAGCCCAGAGAGATGGTGCCAAGGAACATGTTCAAGCAGCCAGATGTTAGTGGAGAGTTGCCTAATGGAAAAGTCACAGATACAAGTTTGAACAGACAAGTGACTGGTCCATCACCTGAAAGTACATCAAACCAATCAAGCAGGGAGGGTCCTGTTGTCCATGGGAAGGAGCTGGGTGTTAGTGACCCAGTTCATGTGATGGGAATGTTTGCTGAAAGGGCTCAAAAGCAACAGAATTCCAATCATTCGGTTGTTGATACTCCACCAGTGACACTATCGGGTCCATCCGGGCAGAGAGACGACTTAGGCAATGCTTCAGCAGCTGCTGCCCGTGCATGGATGTCTGTTGGGGCTGGAGGGTTTAAACAAGGTCCAGATAATTCTAATTCACCCAAAAGTCAGATATCTGCAGATTCTTTGTACAACTCCACAAGAGAGTTCCATCAGCATATTTCAAGAATTAGAGGGGAGTTTCCCTCTGCTGGAATGCCTTTCCAACCATTTCAAGCACTTGCTCCTCAATCTAGTCACACAGGCACTGTTTCACAATTTCCCAACCGGCCTATGGTTTTCCCTCAGTTGGCTTCTGCTGACCAATCTAGATTTCAGATGCAGTCCCCTTGGCGAGGACTCAGTCCTCGTAGCCAGTCAAGACAGAAACAGGAAACCTTTCCCCCTGATTTGAATATTGGTTTTCAACCTCCAGGGTCACCTGCAAAACAATCTTCTGGTGTCCTTGTTGACTCACAGCAACCAGACCTGGCTTTGCAACTATGA 2535 0.4682 MVQIARRKKGRPSKADLARRSGESPAAASQPDLRRSHRRRSVRYNIIDYDGDYLDDEEDERRREKKKLKLMAKLNQDGEEEREEENDMTPSRTCADTPAEDYEDDENEQEEEQEHEQEEEQEEDADGVVKGRKVESKGLHSISVSGTPVILQSGIPLPDKRTLELILDKLQKKDTYGVFAEPVDPEELPDYHDVIDHPMDFATVRQKLAAGSYTTLEQFESDIFLICSNAMQYNAAETIYHKQARSIQELGRKKFEKLRIGFERSQMEQKSEQKAGSNYLVKKQLKKPLVRTSLEPVGSDFCSGATLATIADLQPTSHPMQGGRCERPGNIDGILEANAFWIDANQEKAEDVLSGKGLHSKWGRKSVVLDESRRASYNMSNQPIGRSESIFMTFDSEMKQLVAVGLHAEYSYARSLARFSASLGPIAWKIASHRIQQALPPGFKYGRGWVGEYEQLPTPILMVNNEVHKGTSLAMKSHSTIELPKGDKNCKNVESSIEHPVNRQMLDGKHPLMPDVEGKPFFGSAGERLCAPANILNQEQNNQSRKIGKPEKKGLKQEELNSLSSSKQNNNVLVAKFTSNTPAAESKPREMVPRNMFKQPDVSGELPNGKVTDTSLNRQVTGPSPESTSNQSSREGPVVHGKELGVSDPVHVMGMFAERAQKQQNSNHSVVDTPPVTLSGPSGQRDDLGNASAAAARAWMSVGAGGFKQGPDNSNSPKSQISADSLYNSTREFHQHISRIRGEFPSAGMPFQPFQALAPQSSHTGTVSQFPNRPMVFPQLASADQSRFQMQSPWRGLSPRSQSRQKQETFPPDLNIGFQPPGSPAKQSSGVLVDSQQPDLALQL 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00797 844 ProSiteProfiles Bromodomain profile. 171 241 IPR001487 GO:0005515
Viun6g00797 844 Coils Coil 99 125 - -
Viun6g00797 844 MobiDBLite consensus disorder prediction 99 124 - -
Viun6g00797 844 Gene3D - 158 278 IPR036427 GO:0005515
Viun6g00797 844 Pfam Bromodomain 165 245 IPR001487 GO:0005515
Viun6g00797 844 MobiDBLite consensus disorder prediction 821 844 - -
Viun6g00797 844 MobiDBLite consensus disorder prediction 783 812 - -
Viun6g00797 844 MobiDBLite consensus disorder prediction 783 844 - -
Viun6g00797 844 MobiDBLite consensus disorder prediction 42 90 - -
Viun6g00797 844 SUPERFAMILY Bromodomain 156 258 IPR036427 GO:0005515
Viun6g00797 844 MobiDBLite consensus disorder prediction 538 642 - -
Viun6g00797 844 PRINTS Bromodomain signature 188 204 IPR001487 GO:0005515
Viun6g00797 844 PRINTS Bromodomain signature 222 241 IPR001487 GO:0005515
Viun6g00797 844 PRINTS Bromodomain signature 174 187 IPR001487 GO:0005515
Viun6g00797 844 PRINTS Bromodomain signature 204 222 IPR001487 GO:0005515
Viun6g00797 844 MobiDBLite consensus disorder prediction 559 585 - -
Viun6g00797 844 CDD Bromodomain 159 255 - -
Viun6g00797 844 MobiDBLite consensus disorder prediction 1 129 - -
Viun6g00797 844 ProSitePatterns Bromodomain signature. 177 233 IPR018359 -
Viun6g00797 844 PANTHER BROMODOMAIN CONTAINING PROTEIN 5 843 - -
Viun6g00797 844 SMART bromo_6 152 260 IPR001487 GO:0005515
Viun6g00797 844 MobiDBLite consensus disorder prediction 608 636 - -
Viun6g00797 844 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00797 Viun-Chr6 17762979 17769192 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00797 K22184 - gmx:100799986 1255.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00797 6 17762979 17769192 Viun6g00797 6 17762979 17769192 ECH
Viun6g00797 6 17762979 17769192 Viun8g02822 8 36470112 36475656 PCT