Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02224 ATGGGCATGAATAATGGCGAGGGAAGTGAAGGAGGGGCATTGCGGAGGGTGCTTTACATGTGGGGTTACCTTCCCGGAGCTCTGCCGCAGAGGACGCCGCTTTTGACTCCCGTCGCCGTTAGGTTTCCGCCATGCAGTCACTCTTGGAATGATGTTTGCGGCGGCGGTTGTGGATTCGCTATTGCTATCTCTGGAGCAGGGAAGCTCATCACGTGGGGCTCGACAGATGATTTAGGCCAAAGCTATGTGACTTCTGGCAAGCACGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACTGAAGCATCTATTGTAAAAGCTGCAGCAGGGTGGGCTCATTGTGTTGCTGTAACAGAACATGGAGAAGTTTATACATGGGGATGGAAAGAATGTATTCCCTCTGGGAGGGTATTTGGTGAACCATCGACAGGGGTAGGTCTTGAAAAAGATGTGCCAGGAATTCATAGTCAATTATCGACAGAGCAAGTGAGCCCTCGTTCACAAGGCTCAAGATCTACTGGAGGTACTGCCTCCAATAACAGTGGAGAAGAAAGTACAAAGCGAAGGAGAGTATCTGCAACAAAGCAAACAGCTGAAAGCTCATCATCCAGCAATGATAGCCTGACAGCGTTTCCGTGCCTTGTCACACTAAATCCAGGAATAAGGATAGCTAGTGTTGCTGCCGGTGGACGCCATACACTTGCACTGTCAGATACCGGACTGGTGTGGGCTTGGGGTTATGGAGGTGAAGGGCAGCTTGGTTTGGGTTCAAGAATACGTATGGTATCCTCTCCTCATCTCGTTCCATGTATTGATTCCTCTTATTATGGTAAAGATAGATCTGCTACACTGGTTCGAGGAAGCATGGGTTCAGAGGGACAAAGTTTTCGAGTTCCTGGAAGTTACATAAAGAGAATTGCCTGTGGAGGTCGACATAGTGCAGTCATTACAGATGCTGGAGCCTTGCTTGCTTTTGGTTGGGGACTCTATGGACAGTGTGGGCAAGGAAGTACCGATGATGAACTAAGCCCAACTTGTGTATCTTCCTTATTGGGTATCCACATAGAGGGAGTTGCTGCAGGACTGTGGCATACAGTCTGTACATCTGCTGATGGTGATGTGTATGCATTTGGTGGTAATCAGTTTGGACAGCTAGGAACTGGTGCCGATCAAGCTGAGACTATACCAAGACTAGTGGATTCTCCGAGTTTGGAAAATGTTCATGCAAAGAATATATCGTGTGGGGCTCGTCACACTGCTTTGGTAACAGAGGGTGGAAGAGTTTTCTGCTGGGGATGGAACAAATATGGACAGCTGGGCCTTGGGGACGTGATTGACCGTAACGTTCCTTCTGAAGTCACCATTGAAGGTTGTGTTCCTAAAAATGTTGCTTGTGGTTGGTGGCATACTCTTCTTCTGGCTGAGTCCCCCACCTGA 1434 0.4874 MGMNNGEGSEGGALRRVLYMWGYLPGALPQRTPLLTPVAVRFPPCSHSWNDVCGGGCGFAIAISGAGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTEASIVKAAAGWAHCVAVTEHGEVYTWGWKECIPSGRVFGEPSTGVGLEKDVPGIHSQLSTEQVSPRSQGSRSTGGTASNNSGEESTKRRRVSATKQTAESSSSSNDSLTAFPCLVTLNPGIRIASVAAGGRHTLALSDTGLVWAWGYGGEGQLGLGSRIRMVSSPHLVPCIDSSYYGKDRSATLVRGSMGSEGQSFRVPGSYIKRIACGGRHSAVITDAGALLAFGWGLYGQCGQGSTDDELSPTCVSSLLGIHIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGADQAETIPRLVDSPSLENVHAKNISCGARHTALVTEGGRVFCWGWNKYGQLGLGDVIDRNVPSEVTIEGCVPKNVACGWWHTLLLAESPT 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02224 477 Gene3D - 154 401 IPR009091 -
Viun8g02224 477 MobiDBLite consensus disorder prediction 154 205 - -
Viun8g02224 477 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 225 235 IPR000408 -
Viun8g02224 477 Pfam Regulator of chromosome condensation (RCC1) repeat 222 251 - -
Viun8g02224 477 Pfam Regulator of chromosome condensation (RCC1) repeat 103 127 - -
Viun8g02224 477 MobiDBLite consensus disorder prediction 154 181 - -
Viun8g02224 477 PRINTS Chromosome condensation regulator RCC1 signature 225 241 IPR000408 -
Viun8g02224 477 PRINTS Chromosome condensation regulator RCC1 signature 103 116 IPR000408 -
Viun8g02224 477 PRINTS Chromosome condensation regulator RCC1 signature 360 378 IPR000408 -
Viun8g02224 477 PRINTS Chromosome condensation regulator RCC1 signature 420 441 IPR000408 -
Viun8g02224 477 PRINTS Chromosome condensation regulator RCC1 signature 122 138 IPR000408 -
Viun8g02224 477 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 425 475 IPR000408 -
Viun8g02224 477 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 305 315 IPR000408 -
Viun8g02224 477 Pfam Regulator of chromosome condensation (RCC1) repeat 370 420 IPR000408 -
Viun8g02224 477 Pfam Regulator of chromosome condensation (RCC1) repeat 425 472 IPR000408 -
Viun8g02224 477 Pfam Regulator of chromosome condensation (RCC1) repeat 319 366 IPR000408 -
Viun8g02224 477 SUPERFAMILY RCC1/BLIP-II 19 475 IPR009091 -
Viun8g02224 477 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 67 119 IPR000408 -
Viun8g02224 477 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 59 473 - -
Viun8g02224 477 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 239 318 IPR000408 -
Viun8g02224 477 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 371 424 IPR000408 -
Viun8g02224 477 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 319 370 IPR000408 -
Viun8g02224 477 Gene3D - 10 136 IPR009091 -
Viun8g02224 477 Gene3D - 402 477 IPR009091 -
Viun8g02224 477 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 411 421 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02224 Viun-Chr8 32434445 32439740 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02224 - - gmx:100807837 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03126 1 39477478 39483325 Viun8g02224 8 32434445 32439740 ECH
Viun8g02224 8 32434445 32439740 Viun8g02224 8 32434445 32439740 ECH
Viun1g03126 1 39477478 39483325 Viun8g02224 8 32434445 32439740 PCT