Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03126 ATGAATGGCGAGGGGAGTGAAGCAATGCAAGTGGAGAAGGAGATGTTGGTGTACATGTGGGGTTACCTCCCCGGAGCTCTGCCGCAGAGGACGCCGCTGCTGACGCCGGTCCTCGTTAGGGTTCCGCCGTCAGGTTACTCCTGGAGTGATGTTTGCGGCGGCGGTTGTGGATTTGCCATGGCTATCTCTGAGCCCGGAAAGCTCATAACATGGGGTTCATCAGATGATTTAGGCCAAAGCTATGTTACATCAGGCAAACATGGGGAAACACCAGAGCCTTTCCCTCTTCCAACTGAAGTGACTATTGTAAAAGCTGCATCTGGATGGGCGCATTGTGTTGCAGTCACTGACTGTGGAGAAGTTTATACATGGGGATGGAGGGAATGTGTTCCCTCTGGGAAGGTGTTTGGTGAATCATCAACTGGGGTGAAACCTGAAAAGGATGTACCGGCAAGGCAAAGTTCATTCTTGACGGAGCAAAGAACTGCTTCTAGTACCAGTGGAGAAGAAAGTACAAAAAGAAGAAGAGTTTCTTCATCAAAGCAAACAGCTGAAACCTCTTCTTCCAGTGATGAAAATCTGACAGCGTTGCCATGTCTTGTCACACTAAACCCAGGCATAAGGATAGCAAGTGTTGCTGCTGGTGGTCGCCATACCTTAGCATTGTCAGTTTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGTCAGCTTGGTTTGGGTTCTAGAATACGAATGGTGTCCTCTCCTCATCTAGTTCCTTGTATTAATACCTCTTCTTATGGTAAAGATATGTCGTTGTCACTGGCTCGAGGAAGCATGAGTTCAGATGGACAAAATTTCAGAGTACCAGGAAGTTATATAAAGGCAATTGCCTGCGGAGGTCGACACAGTGCAGTAATAACAGATGCTGGAGCTGTGCTTACATTTGGTTGGGGACTTTATGGACAGGTAATTAAGTGTGGGCAAGGAAGTACAGATGATGAACTGAGTCCGACCTGTGTATCTTCCTTATTGGGTATTCGAACAGAGGGGGTTGCTGCAGGACTGTGGCATACTGTGTGTACATCTGCTGATGGTGATGTATATGCATTTGGTGGAAACCAGTTTGGGCAGCTGGGAACTGGCTCTGACCAAGCTGAGACTATACCAAGGCTCCTGGATTGTCCGAGCTTGGAAAATGTCAACGTTAAGAGGATATCTTGTGGGGCGCGCCACTCTGCTCTAGTAACAGATACGGGAAAAGTCTTCTGCTGGGGATGGAACAAGTATGGACAGTTGGGCCTTGGGGACGTGATTGACCGTAACATTCCTTCCGAAGTCACCCTCGAAGGTTGCGTAGCTAAAAACGTTGCATGCGGCTGGTGGCATACTCTTCTTCTGGCCGAGTCCCCCATTTGA 1410 0.4872 MNGEGSEAMQVEKEMLVYMWGYLPGALPQRTPLLTPVLVRVPPSGYSWSDVCGGGCGFAMAISEPGKLITWGSSDDLGQSYVTSGKHGETPEPFPLPTEVTIVKAASGWAHCVAVTDCGEVYTWGWRECVPSGKVFGESSTGVKPEKDVPARQSSFLTEQRTASSTSGEESTKRRRVSSSKQTAETSSSSDENLTALPCLVTLNPGIRIASVAAGGRHTLALSVSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCINTSSYGKDMSLSLARGSMSSDGQNFRVPGSYIKAIACGGRHSAVITDAGAVLTFGWGLYGQVIKCGQGSTDDELSPTCVSSLLGIRTEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGSDQAETIPRLLDCPSLENVNVKRISCGARHSALVTDTGKVFCWGWNKYGQLGLGDVIDRNIPSEVTLEGCVAKNVACGWWHTLLLAESPI 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03126 469 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 10 464 - -
Viun1g03126 469 Gene3D - 10 144 IPR009091 -
Viun1g03126 469 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 417 467 IPR000408 -
Viun1g03126 469 MobiDBLite consensus disorder prediction 153 167 - -
Viun1g03126 469 SUPERFAMILY RCC1/BLIP-II 16 467 IPR009091 -
Viun1g03126 469 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 294 304 IPR000408 -
Viun1g03126 469 Gene3D - 177 265 IPR009091 -
Viun1g03126 469 Gene3D - 266 468 IPR009091 -
Viun1g03126 469 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 66 118 IPR000408 -
Viun1g03126 469 MobiDBLite consensus disorder prediction 137 190 - -
Viun1g03126 469 PRINTS Chromosome condensation regulator RCC1 signature 102 115 IPR000408 -
Viun1g03126 469 PRINTS Chromosome condensation regulator RCC1 signature 352 370 IPR000408 -
Viun1g03126 469 PRINTS Chromosome condensation regulator RCC1 signature 412 433 IPR000408 -
Viun1g03126 469 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 228 307 IPR000408 -
Viun1g03126 469 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 403 413 IPR000408 -
Viun1g03126 469 Pfam Regulator of chromosome condensation (RCC1) repeat 209 240 - -
Viun1g03126 469 Pfam Regulator of chromosome condensation (RCC1) repeat 291 320 - -
Viun1g03126 469 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 363 416 IPR000408 -
Viun1g03126 469 Pfam Regulator of chromosome condensation (RCC1) repeat 417 464 IPR000408 -
Viun1g03126 469 Pfam Regulator of chromosome condensation (RCC1) repeat 362 412 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03126 Viun-Chr1 39477478 39483325 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03126 - - gmx:100778841 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03126 1 39477478 39483325 Viun1g03126 1 39477478 39483325 ECH
Viun1g03126 1 39477478 39483325 Viun8g02224 8 32434445 32439740 ECH
Viun1g03126 1 39477478 39483325 Viun8g02224 8 32434445 32439740 PCT