Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02203 ATGCCTTTTATTTCCAGCATTCAGCGTCAAACCGATTTCAACGTCTTCGATTCCAACACTCCTATTGTCATAGACAATGGCGCCTCCTATTTCCGCATAGGTTGGGCTGGAGAGTCCGAACCTCGTGTTATTTTTCGCAACATTGTGCAAAGGCCACGCCATAAAGTAACCGGTGAGACTGTCACCATTGTGGGTGACCATGATCCTGCTTTGCTGAAATACTTCGACTGCACTCGCTCTGGACCACGTTCTGCATTTGACAATAATGTTGTGTACCAGTTTGAAACGATGGAATACATTCTTGATTTTGGATTTGACCGGATGGGTGCAACTACTGAGATTGATCATCCTGTCCTGATCACCGAGTGTGTATGCAACCCAGTTCAATCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACTTACGGAGTTCCATCAATTGCTTTTGGTAATGATGTGGCATTCAGCTACAAATACAATCAACAACAAGGAGTTTGTGCTAAAGACGGTCTTGCTTTGTGTCCTGGATTCAACACAACCCATGTGATTCCGTTTGTAGACGGGGAGCCTGTGTATGAAGGATGCTGTCGTACTAATGTTGGTGGATTCCATGTGACTAATCATTTGAAGCAACTCCTTTCACTTAAATATCCATATCATTTGACTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTACATTGCATCAGATTATGCCTCGGAAGCTAGGTTGTTTCAGAAAGAACCTGAGCAAGCTGAAGCAAAAAACAGATATTGGCAACTCCCTTGGGTTCCACCCCCCACTGATGAGCCTCCTTCTGAGGAAGAAATCGCAAGAAAGGCAGCAATTAAAGAGAAACAAGGTCAAAGGCTTCGAGAAATGGCTGAGGCCAAGAGATCTTCTAAAATTAATGAACTGGAAAATGAATTGCATGGTTTAGAGTTTCTTTTGCATCAGCTTGAACAAGTGGATGAGAGTGATGTTCTATCATTCCTGTCAGAAACTGGCTATGTCAATAGGCAGGAGATAGAGTCTGCACGTAATAAAGTTATGCAATCATTACGGAAAGCAAAAGGCGAACCAAAGAATGAGCAAGCTGAAACTGAAAAGGACGATCTTGCCACTAGCGAGAAGTATTCTCTTATAAACATTCCTGATGACATGTTGACTGAAGAACAGCTCAATGAAAAGAAGAAACAGTTGTCACTCAAATCTATGGCTGACGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAACGAGAGAGAAAACAACAGCTAGAGGAGGAGAAACGCCTAGAGAACCCGGACCTTTATTTGGAGCAACTGCATGCTAGATACAAAGACCTTTCAGAAAGAGTTGACCAACAAAAACGACTTAAGACAAACGGAGGCCATTCAAACGGAAATAATGTGTCCGGTGGTATTGGCCGTGGTGAAAGACTGAATGCTGCTCAGAGAGAAAGAATGCGTCTCCTGACAACTGCAGCTTTTGACCGTGGTAAGGGTGAAGATACATTTGGTGCTAGAGATGAAGATTGGCAGCTTTACAAATTGATGAGCAAAGATTATGGTAACGATGATGATGAAGAACCTGATGAAGATGAAACAGAGCTGGCCCGCATCTCTTCTAGGCTACAGGACCTGGATCCAACATTTATACCCAAGTTAGAAGCTGGTACCAATCAACCTGCTGAGGTGCCACGTGTTCGTCCTCTGACCAAAGAAGATTTTCAGATTGTTCTTGGGGTGGAAAGATTCAGATGTCCTGAAATACTGTTTAATCCAAACTGGATTGGGGTTGATCAGGTAGGATTAGACGAGATGGCTGGAGTCTCATTAAGGAGGTTACCATACATGGATGAAACCTTGGAACAGAGACTGACTAGTTCCATACTTGTTACTGGTGGAAGTTCTCTTTTCCCTGGTATAGTTGAACGTCTGGAAGCTGGAATTCGGATGATTAGACCATGTGGCGCACCTATAAAAATAGTGAGAGCATTGGATCCAGTCATGGATGCATGGCGTGGGGCTGCTACCTTCGCCTCAGACTCACAGTTCCATATGCAAACTTTCAGTAGACAGGATTATTATGAAAAGGGTGAAGATTGGCTTCGCAGGTATCAACTGCGGTATACATTGTAA 2169 0.4334 MPFISSIQRQTDFNVFDSNTPIVIDNGASYFRIGWAGESEPRVIFRNIVQRPRHKVTGETVTIVGDHDPALLKYFDCTRSGPRSAFDNNVVYQFETMEYILDFGFDRMGATTEIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGNDVAFSYKYNQQQGVCAKDGLALCPGFNTTHVIPFVDGEPVYEGCCRTNVGGFHVTNHLKQLLSLKYPYHLTRFTWEKVEDLKMEHCYIASDYASEARLFQKEPEQAEAKNRYWQLPWVPPPTDEPPSEEEIARKAAIKEKQGQRLREMAEAKRSSKINELENELHGLEFLLHQLEQVDESDVLSFLSETGYVNRQEIESARNKVMQSLRKAKGEPKNEQAETEKDDLATSEKYSLINIPDDMLTEEQLNEKKKQLSLKSMADGRQRLKQKRYEEELERERKQQLEEEKRLENPDLYLEQLHARYKDLSERVDQQKRLKTNGGHSNGNNVSGGIGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGARDEDWQLYKLMSKDYGNDDDEEPDEDETELARISSRLQDLDPTFIPKLEAGTNQPAEVPRVRPLTKEDFQIVLGVERFRCPEILFNPNWIGVDQVGLDEMAGVSLRRLPYMDETLEQRLTSSILVTGGSSLFPGIVERLEAGIRMIRPCGAPIKIVRALDPVMDAWRGAATFASDSQFHMQTFSRQDYYEKGEDWLRRYQLRYTL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02203 722 MobiDBLite consensus disorder prediction 402 425 - -
Viun8g02203 722 Gene3D Actin; Chain A, domain 4 206 258 - -
Viun8g02203 722 Gene3D - 612 681 - -
Viun8g02203 722 FunFam ARP5 actin-related protein 5 homolog 612 681 - -
Viun8g02203 722 Gene3D - 150 205 - -
Viun8g02203 722 FunFam Actin-related protein 5 202 256 - -
Viun8g02203 722 PANTHER ACTIN 21 710 IPR004000 -
Viun8g02203 722 Gene3D Actin; Chain A, domain 2 49 85 - -
Viun8g02203 722 Gene3D - 22 149 - -
Viun8g02203 722 FunFam Actin-related protein 5 18 169 - -
Viun8g02203 722 Gene3D Actin; Chain A, domain 4 518 611 - -
Viun8g02203 722 SUPERFAMILY Actin-like ATPase domain 17 157 IPR043129 -
Viun8g02203 722 SUPERFAMILY Actin-like ATPase domain 169 715 IPR043129 -
Viun8g02203 722 FunFam Actin-related protein 5 582 611 - -
Viun8g02203 722 Coils Coil 308 328 - -
Viun8g02203 722 Gene3D - 682 710 - -
Viun8g02203 722 MobiDBLite consensus disorder prediction 357 378 - -
Viun8g02203 722 FunFam Putative actin-related protein 5 682 710 - -
Viun8g02203 722 Coils Coil 448 468 - -
Viun8g02203 722 FunFam Actin-related protein 5 170 201 - -
Viun8g02203 722 Coils Coil 418 444 - -
Viun8g02203 722 SMART actin_3 19 718 IPR004000 -
Viun8g02203 722 Pfam Actin 587 715 IPR004000 -
Viun8g02203 722 Pfam Actin 17 267 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02203 Viun-Chr8 32168033 32174748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02203 588 715 Miscellaneous Gene Families AT2G42100 32.031 3.77e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02203 K11672 - gmx:100804305 1250.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02203 8 32168033 32174748 Viun8g02203 8 32168033 32174748 ECH
Viun1g03082 1 39160809 39165825 Viun8g02203 8 32168033 32174748 PCT